Wall clock time and date at job start Mon Mar 30 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48502 * 109.46768 * 240.27430 * 3 2 1 5 5 H 1.48494 * 109.47531 * 0.27594 * 3 2 1 6 6 H 1.48497 * 109.47143 * 120.28198 * 3 2 1 7 7 C 1.37875 * 120.00481 * 180.27457 * 2 1 3 8 8 H 1.07997 * 120.00083 * 174.19235 * 7 2 1 9 9 C 1.50698 * 119.99619 * 354.20115 * 7 2 1 10 10 O 1.42897 * 110.27146 * 56.98939 * 9 7 2 11 11 C 1.54340 * 110.30360 * 294.91615 * 9 7 2 12 12 C 1.54339 * 102.39955 * 214.71004 * 11 9 7 13 13 C 1.51385 * 105.16940 * 26.36474 * 12 11 9 14 14 C 1.38416 * 130.33612 * 162.77932 * 13 12 11 15 15 C 1.38600 * 120.16889 * 180.02562 * 14 13 12 16 16 O 1.35905 * 120.08900 * 179.97438 * 15 14 13 17 17 C 1.38743 * 119.81887 * 0.02562 * 15 14 13 18 18 C 1.38011 * 119.87823 * 359.97438 * 17 15 14 19 19 C 1.38258 * 109.75898 * 342.80153 * 13 12 11 20 20 H 0.96994 * 119.99997 * 359.72244 * 1 2 3 21 21 H 0.96699 * 113.99873 * 59.29782 * 10 9 7 22 22 H 1.09001 * 110.81903 * 332.93472 * 11 9 7 23 23 H 1.08995 * 110.82053 * 96.28460 * 11 9 7 24 24 H 1.08998 * 110.30625 * 145.28513 * 12 11 9 25 25 H 1.08994 * 110.30424 * 267.34373 * 12 11 9 26 26 H 1.08000 * 119.91208 * 0.02562 * 14 13 12 27 27 H 0.96693 * 113.99906 * 90.00018 * 16 15 14 28 28 H 1.08001 * 120.06214 * 179.97438 * 17 15 14 29 29 H 1.07997 * 119.85208 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0977 1.6994 -1.2159 5 1 1.2841 2.7465 0.0067 6 1 3.1079 1.6936 1.2090 7 6 2.0046 -1.1940 -0.0057 8 1 3.0804 -1.1958 -0.1004 9 6 1.2569 -2.4963 0.1199 10 8 0.2821 -2.6098 -0.9188 11 6 0.5793 -2.5936 1.5032 12 6 0.6836 -4.1009 1.8181 13 6 1.8913 -4.5846 1.0440 14 6 2.6414 -5.7395 1.1838 15 6 3.7219 -5.9738 0.3480 16 8 4.4575 -7.1080 0.4870 17 6 4.0510 -5.0467 -0.6304 18 6 3.3012 -3.8962 -0.7674 19 6 2.2209 -3.6626 0.0680 20 1 -0.4850 0.8400 0.0041 21 1 0.6527 -2.5767 -1.8113 22 1 1.1221 -2.0048 2.2427 23 1 -0.4623 -2.2775 1.4474 24 1 0.8331 -4.2546 2.8868 25 1 -0.2145 -4.6202 1.4839 26 1 2.3840 -6.4599 1.9462 27 1 4.1389 -7.8509 -0.0435 28 1 4.8924 -5.2251 -1.2836 29 1 3.5580 -3.1746 -1.5288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:50 Heat of formation + Delta-G solvation = -90.840900 kcal Electronic energy + Delta-G solvation = -14834.732312 eV Core-core repulsion = 12300.751201 eV Total energy + Delta-G solvation = -2533.981112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18595 -38.97427 -36.64086 -34.55044 -34.21351 -31.61217 -29.25993 -28.47594 -25.52112 -23.54312 -21.97424 -21.32546 -19.02052 -18.77170 -17.54605 -16.67985 -16.51869 -16.10709 -15.59176 -15.08446 -14.76279 -14.41273 -14.04848 -13.45905 -13.09605 -13.02055 -12.82466 -12.72273 -12.57563 -12.33738 -12.09028 -11.81981 -11.26406 -10.92652 -10.61709 -10.12501 -9.67756 -9.24798 -8.06396 -6.30280 0.40069 0.47355 1.41011 1.42521 1.49772 2.41011 2.76361 3.16699 3.27824 3.76868 3.96214 4.15594 4.22391 4.42767 4.50121 4.54946 4.71603 4.88613 5.05996 5.11694 5.32180 5.42180 5.49422 5.56551 5.67842 5.73358 5.95893 6.00641 6.19700 6.74246 6.93215 7.35496 7.56637 8.94221 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.009219 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.994285 B = 3036.598461 C = 3382.067881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.050 0.950 9 C 0.276 3.724 10 O -0.564 6.564 11 C -0.084 4.084 12 C -0.076 4.076 13 C -0.091 4.091 14 C -0.143 4.143 15 C 0.097 3.903 16 O -0.502 6.502 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.125 4.125 20 H 0.259 0.741 21 H 0.356 0.644 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.408 0.592 28 H 0.147 0.853 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -10.370 0.126 11.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.069 0.931 9 C 0.237 3.763 10 O -0.368 6.368 11 C -0.122 4.122 12 C -0.113 4.113 13 C -0.091 4.091 14 C -0.161 4.161 15 C 0.053 3.947 16 O -0.315 6.315 17 C -0.170 4.170 18 C -0.112 4.112 19 C -0.126 4.126 20 H 0.068 0.932 21 H 0.200 0.800 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.160 0.840 27 H 0.267 0.733 28 H 0.165 0.835 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.576 -9.970 1.035 11.019 hybrid contribution 0.410 0.994 -0.857 1.375 sum 4.987 -8.977 0.178 10.270 Atomic orbital electron populations 1.70226 1.06987 1.26945 1.47719 1.25677 0.95401 1.01836 0.93637 0.85827 0.78613 0.79589 0.78829 1.19576 1.20927 1.19916 1.21773 0.93317 0.92128 1.53935 0.93135 1.18277 0.83445 0.88492 0.86111 1.86470 1.37681 1.96121 1.16551 1.21918 1.00209 0.94012 0.96033 1.21109 0.94963 0.95592 0.99622 1.20739 0.97080 0.94112 0.97198 1.20973 0.95322 0.97936 1.01855 1.18215 0.91783 0.89173 0.95564 1.84759 1.54616 1.21114 1.71037 1.21446 1.01307 0.94792 0.99483 1.20682 0.94226 0.97083 0.99206 1.21843 0.96858 0.97752 0.96145 0.93169 0.79967 0.92793 0.92705 0.89407 0.90148 0.83985 0.73312 0.83480 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.53 12.16 21.45 0.26 -50.27 15 2 C 0.04 2.07 5.27 84.65 0.45 2.52 15 3 Si 0.95 42.95 29.54 68.60 2.03 44.98 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.57 -31.12 7.98 25.60 0.20 -30.92 15 8 H 0.05 2.74 7.57 -2.91 -0.02 2.72 15 9 C 0.28 13.80 0.80 -11.61 -0.01 13.79 15 10 O -0.56 -29.27 12.18 -148.98 -1.81 -31.09 15 11 C -0.08 -3.99 5.66 31.50 0.18 -3.81 15 12 C -0.08 -2.89 6.77 30.52 0.21 -2.68 15 13 C -0.09 -3.52 6.13 -19.60 -0.12 -3.64 15 14 C -0.14 -4.60 9.98 22.40 0.22 -4.38 15 15 C 0.10 2.93 6.70 22.48 0.15 3.09 15 16 O -0.50 -12.08 13.51 -92.48 -1.25 -13.32 15 17 C -0.15 -4.81 9.99 22.34 0.22 -4.58 15 18 C -0.09 -3.58 9.60 22.29 0.21 -3.36 15 19 C -0.13 -5.44 5.25 -19.56 -0.10 -5.55 15 20 H 0.26 14.21 8.31 -92.71 -0.77 13.44 15 21 H 0.36 16.75 9.07 -74.06 -0.67 16.08 15 22 H 0.05 2.64 7.91 -2.39 -0.02 2.62 15 23 H 0.05 2.82 8.08 -2.39 -0.02 2.80 15 24 H 0.09 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.41 5.35 9.06 -74.06 -0.67 4.68 15 28 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 29 H 0.12 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -64.60 253.29 0.68 -63.93 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.16 Total: 25.29 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 1.61 Total: -39.51 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.26 Total: -50.27 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -3.06 Total: -44.41 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.60 0.68 -63.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.913 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds