Wall clock time and date at job start Mon Mar 30 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47147 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.47207 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99814 * 3 2 1 7 7 C 1.37876 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00159 * 185.40981 * 7 2 1 9 9 C 1.50699 * 119.99647 * 5.41682 * 7 2 1 10 10 O 1.42897 * 110.34538 * 303.54368 * 9 7 2 11 11 C 1.54513 * 110.27646 * 65.79933 * 9 7 2 12 12 C 1.54334 * 102.31775 * 145.56019 * 11 9 7 13 13 C 1.51379 * 105.17401 * 333.43506 * 12 11 9 14 14 C 1.38416 * 130.33554 * 197.18887 * 13 12 11 15 15 C 1.38600 * 120.16920 * 179.97438 * 14 13 12 16 16 O 1.35903 * 120.09177 * 179.97438 * 15 14 13 17 17 C 1.38749 * 119.81631 * 359.97438 * 15 14 13 18 18 C 1.38011 * 119.87778 * 0.02562 * 17 15 14 19 19 C 1.38261 * 109.75575 * 17.17864 * 13 12 11 20 20 H 0.97000 * 120.00668 * 359.97438 * 1 2 3 21 21 H 0.96699 * 114.00698 * 299.33393 * 10 9 7 22 22 H 1.09002 * 111.03559 * 27.28220 * 11 9 7 23 23 H 1.08997 * 110.68198 * 263.68667 * 11 9 7 24 24 H 1.09000 * 110.30369 * 214.50508 * 12 11 9 25 25 H 1.09000 * 110.29907 * 92.35592 * 12 11 9 26 26 H 1.08002 * 119.91683 * 0.02562 * 14 13 12 27 27 H 0.96695 * 113.99878 * 270.02660 * 16 15 14 28 28 H 1.08001 * 120.06225 * 179.97438 * 17 15 14 29 29 H 1.07992 * 119.85327 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0810 -1.1960 0.0887 9 6 1.2562 -2.4962 -0.1221 10 8 0.2784 -2.6068 0.9141 11 6 0.5849 -2.5994 -1.5100 12 6 0.6838 -4.1097 -1.8120 13 6 1.8876 -4.5920 -1.0312 14 6 2.6328 -5.7514 -1.1593 15 6 3.7104 -5.9832 -0.3191 16 8 4.4407 -7.1223 -0.4459 17 6 4.0416 -5.0490 0.6519 18 6 3.2967 -3.8940 0.7771 19 6 2.2190 -3.6630 -0.0623 20 1 -0.4851 0.8400 0.0004 21 1 0.6485 -2.5923 1.8074 22 1 1.1317 -2.0191 -2.2532 23 1 -0.4565 -2.2818 -1.4585 24 1 0.8348 -4.2729 -2.8791 25 1 -0.2166 -4.6226 -1.4740 26 1 2.3743 -6.4769 -1.9165 27 1 4.1170 -7.8587 0.0907 28 1 4.8803 -5.2258 1.3090 29 1 3.5550 -3.1669 1.5327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260738010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:52 Heat of formation + Delta-G solvation = -68.490194 kcal Electronic energy + Delta-G solvation = -14833.296649 eV Core-core repulsion = 12300.284736 eV Total energy + Delta-G solvation = -2533.011912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.70169 -37.56264 -35.02964 -32.93072 -32.17985 -30.08107 -27.73779 -26.65530 -23.70114 -22.05359 -20.55915 -19.56470 -17.52273 -17.04433 -15.92539 -15.07074 -14.79678 -14.63383 -13.96965 -13.42505 -13.19251 -12.89378 -12.37225 -11.74237 -11.54026 -11.35637 -11.05095 -10.95450 -10.79338 -10.66923 -10.24291 -10.09018 -9.89480 -9.08202 -8.59402 -8.27585 -8.19585 -7.76690 -6.02601 -4.20279 1.81477 1.89619 3.26276 3.33842 3.36538 4.15095 4.37603 4.54913 5.20740 5.24454 5.43761 5.59377 5.86843 5.92534 6.03583 6.08474 6.20073 6.40572 6.48638 6.64277 6.83035 6.93203 7.11827 7.30792 7.35355 7.40671 7.67679 7.80698 7.97606 8.15376 8.78375 9.31235 9.55036 10.99209 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.009213 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.700005 B = 3038.423530 C = 3385.172034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.082 3.918 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.288 3.712 10 O -0.548 6.548 11 C -0.083 4.083 12 C -0.086 4.086 13 C -0.081 4.081 14 C -0.143 4.143 15 C 0.081 3.919 16 O -0.503 6.503 17 C -0.155 4.155 18 C -0.084 4.084 19 C -0.091 4.091 20 H 0.260 0.740 21 H 0.350 0.650 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.380 0.620 28 H 0.120 0.880 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -8.806 0.166 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.077 0.923 9 C 0.248 3.752 10 O -0.350 6.350 11 C -0.121 4.121 12 C -0.123 4.123 13 C -0.081 4.081 14 C -0.161 4.161 15 C 0.037 3.963 16 O -0.312 6.312 17 C -0.174 4.174 18 C -0.103 4.103 19 C -0.092 4.092 20 H 0.069 0.931 21 H 0.194 0.806 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.234 0.766 28 H 0.138 0.862 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.073 -8.373 -0.759 8.951 hybrid contribution 0.791 0.602 0.752 1.246 sum 3.864 -7.771 -0.008 8.679 Atomic orbital electron populations 1.70114 1.05720 1.26283 1.46597 1.25000 0.94704 0.98859 0.93867 0.86709 0.80051 0.83604 0.78278 1.20500 1.21182 1.19847 1.21511 0.93467 0.90600 1.54350 0.92310 1.18224 0.82863 0.87936 0.86164 1.86519 1.36398 1.96218 1.15911 1.22096 1.02301 0.91099 0.96582 1.21232 0.94464 0.98726 0.97916 1.20676 0.96609 0.93330 0.97502 1.20745 0.95691 0.98441 1.01229 1.18181 0.92835 0.88365 0.96889 1.84823 1.55050 1.21176 1.70110 1.21206 1.01183 0.95788 0.99194 1.20611 0.94313 0.95998 0.99338 1.22067 0.95643 0.97766 0.93697 0.93051 0.80565 0.91261 0.90234 0.91995 0.90972 0.86602 0.76557 0.86245 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.80 12.18 55.43 0.68 -23.12 15 2 C 0.08 2.21 5.27 -17.82 -0.09 2.11 15 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.56 -14.91 8.00 -34.44 -0.28 -15.18 15 8 H 0.06 1.57 7.57 -52.49 -0.40 1.17 15 9 C 0.29 7.03 0.80 -91.79 -0.07 6.96 15 10 O -0.55 -13.77 12.16 -35.23 -0.43 -14.19 15 11 C -0.08 -1.93 5.70 -25.24 -0.14 -2.07 15 12 C -0.09 -1.67 6.76 -26.85 -0.18 -1.86 15 13 C -0.08 -1.62 6.13 -104.21 -0.64 -2.26 15 14 C -0.14 -2.53 9.98 -39.38 -0.39 -2.92 15 15 C 0.08 1.38 6.70 -39.26 -0.26 1.12 15 16 O -0.50 -7.23 13.51 -19.43 -0.26 -7.50 15 17 C -0.16 -2.68 9.99 -39.48 -0.39 -3.07 15 18 C -0.08 -1.65 9.61 -39.55 -0.38 -2.03 15 19 C -0.09 -1.99 5.24 -104.16 -0.55 -2.53 15 20 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 21 H 0.35 7.91 9.08 45.56 0.41 8.33 15 22 H 0.07 1.64 7.92 -51.93 -0.41 1.23 15 23 H 0.08 1.96 8.09 -51.93 -0.42 1.54 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.12 1.80 8.06 -52.49 -0.42 1.37 15 27 H 0.38 3.47 9.06 45.56 0.41 3.88 15 28 H 0.12 1.76 8.06 -52.49 -0.42 1.34 15 29 H 0.12 2.31 8.06 -52.49 -0.42 1.89 15 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -30.21 253.39 -6.25 -36.46 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -1.65 Total: 10.62 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -3.38 Total: -21.74 kcal Atomic # 7 Polarization: -23.80 SS G_CDS: 0.68 Total: -23.12 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.69 Total: -21.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.21 -6.25 -36.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.031 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds