Wall clock time and date at job start Mon Mar 30 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47147 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.47207 * 29.99777 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99814 * 3 2 1 7 7 C 1.37876 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00159 * 185.40981 * 7 2 1 9 9 C 1.50699 * 119.99647 * 5.41682 * 7 2 1 10 10 O 1.42897 * 110.34538 * 303.54368 * 9 7 2 11 11 C 1.54513 * 110.27646 * 65.79933 * 9 7 2 12 12 C 1.54334 * 102.31775 * 145.56019 * 11 9 7 13 13 C 1.51379 * 105.17401 * 333.43506 * 12 11 9 14 14 C 1.38416 * 130.33554 * 197.18887 * 13 12 11 15 15 C 1.38600 * 120.16920 * 179.97438 * 14 13 12 16 16 O 1.35903 * 120.09177 * 179.97438 * 15 14 13 17 17 C 1.38749 * 119.81631 * 359.97438 * 15 14 13 18 18 C 1.38011 * 119.87778 * 0.02562 * 17 15 14 19 19 C 1.38261 * 109.75575 * 17.17864 * 13 12 11 20 20 H 0.97000 * 120.00668 * 359.97438 * 1 2 3 21 21 H 0.96699 * 114.00698 * 299.33393 * 10 9 7 22 22 H 1.09002 * 111.03559 * 27.28220 * 11 9 7 23 23 H 1.08997 * 110.68198 * 263.68667 * 11 9 7 24 24 H 1.09000 * 110.30369 * 214.50508 * 12 11 9 25 25 H 1.09000 * 110.29907 * 92.35592 * 12 11 9 26 26 H 1.08002 * 119.91683 * 0.02562 * 14 13 12 27 27 H 0.96695 * 113.99878 * 270.02660 * 16 15 14 28 28 H 1.08001 * 120.06225 * 179.97438 * 17 15 14 29 29 H 1.07992 * 119.85327 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0810 -1.1960 0.0887 9 6 1.2562 -2.4962 -0.1221 10 8 0.2784 -2.6068 0.9141 11 6 0.5849 -2.5994 -1.5100 12 6 0.6838 -4.1097 -1.8120 13 6 1.8876 -4.5920 -1.0312 14 6 2.6328 -5.7514 -1.1593 15 6 3.7104 -5.9832 -0.3191 16 8 4.4407 -7.1223 -0.4459 17 6 4.0416 -5.0490 0.6519 18 6 3.2967 -3.8940 0.7771 19 6 2.2190 -3.6630 -0.0623 20 1 -0.4851 0.8400 0.0004 21 1 0.6485 -2.5923 1.8074 22 1 1.1317 -2.0191 -2.2532 23 1 -0.4565 -2.2818 -1.4585 24 1 0.8348 -4.2729 -2.8791 25 1 -0.2166 -4.6226 -1.4740 26 1 2.3743 -6.4769 -1.9165 27 1 4.1170 -7.8587 0.0907 28 1 4.8803 -5.2258 1.3090 29 1 3.5550 -3.1669 1.5327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:52 Heat of formation + Delta-G solvation = -90.706847 kcal Electronic energy + Delta-G solvation = -14834.260035 eV Core-core repulsion = 12300.284736 eV Total energy + Delta-G solvation = -2533.975299 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18654 -38.97261 -36.63593 -34.55111 -34.21427 -31.61211 -29.25951 -28.47689 -25.51713 -23.54328 -21.97145 -21.32769 -19.01859 -18.77124 -17.55452 -16.68028 -16.51758 -16.10603 -15.58801 -15.08524 -14.76340 -14.41650 -14.05660 -13.45852 -13.09611 -13.01753 -12.84037 -12.71878 -12.55830 -12.33346 -12.08578 -11.82157 -11.26586 -10.93956 -10.60986 -10.12123 -9.67820 -9.24889 -8.06259 -6.30080 0.39948 0.47318 1.39936 1.42198 1.50881 2.40994 2.76251 3.16848 3.27870 3.76581 3.96047 4.15514 4.21894 4.42690 4.50369 4.54804 4.71560 4.88368 5.06008 5.11623 5.32334 5.42003 5.49380 5.55969 5.67913 5.73451 5.95677 6.00480 6.19994 6.74427 6.93188 7.35527 7.56903 8.94556 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.009213 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.700005 B = 3038.423530 C = 3385.172034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.572 4.572 8 H 0.050 0.950 9 C 0.276 3.724 10 O -0.564 6.564 11 C -0.084 4.084 12 C -0.076 4.076 13 C -0.091 4.091 14 C -0.143 4.143 15 C 0.097 3.903 16 O -0.502 6.502 17 C -0.152 4.152 18 C -0.094 4.094 19 C -0.126 4.126 20 H 0.259 0.741 21 H 0.356 0.644 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.408 0.592 28 H 0.147 0.853 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -10.430 -0.089 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.166 4.166 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.610 4.610 8 H 0.069 0.931 9 C 0.237 3.763 10 O -0.368 6.368 11 C -0.122 4.122 12 C -0.113 4.113 13 C -0.091 4.091 14 C -0.161 4.161 15 C 0.053 3.947 16 O -0.315 6.315 17 C -0.170 4.170 18 C -0.112 4.112 19 C -0.126 4.126 20 H 0.068 0.932 21 H 0.200 0.800 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.160 0.840 27 H 0.267 0.733 28 H 0.165 0.835 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.566 -10.024 -1.001 11.060 hybrid contribution 0.399 0.991 0.857 1.370 sum 4.966 -9.033 -0.144 10.309 Atomic orbital electron populations 1.70232 1.06986 1.26846 1.47847 1.25678 0.95400 1.01839 0.93665 0.85767 0.78904 0.79915 0.78238 1.20208 1.20892 1.19416 1.21800 0.93244 0.92139 1.53831 0.93146 1.18305 0.83379 0.88506 0.86140 1.86473 1.37396 1.96326 1.16562 1.21953 1.00210 0.94009 0.96030 1.21115 0.95009 0.95586 0.99586 1.20742 0.97082 0.94046 0.97234 1.20973 0.95377 0.97897 1.01840 1.18216 0.91853 0.89022 0.95624 1.84759 1.54680 1.21211 1.70881 1.21447 1.01334 0.94686 0.99567 1.20680 0.94282 0.97072 0.99154 1.21848 0.96866 0.97769 0.96164 0.93194 0.79975 0.92708 0.92746 0.89384 0.90162 0.83981 0.73308 0.83491 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.60 12.18 21.45 0.26 -50.34 15 2 C 0.04 2.05 5.27 84.65 0.45 2.50 15 3 Si 0.95 43.02 29.54 68.60 2.03 45.04 15 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.57 -31.06 8.00 25.60 0.20 -30.85 15 8 H 0.05 2.74 7.57 -2.91 -0.02 2.72 15 9 C 0.28 13.79 0.80 -11.55 -0.01 13.78 15 10 O -0.56 -29.23 12.16 -148.98 -1.81 -31.04 15 11 C -0.08 -4.00 5.70 31.56 0.18 -3.82 15 12 C -0.08 -2.89 6.76 30.52 0.21 -2.68 15 13 C -0.09 -3.50 6.13 -19.60 -0.12 -3.62 15 14 C -0.14 -4.59 9.98 22.40 0.22 -4.37 15 15 C 0.10 2.94 6.70 22.48 0.15 3.09 15 16 O -0.50 -12.06 13.51 -92.45 -1.25 -13.31 15 17 C -0.15 -4.80 9.99 22.34 0.22 -4.58 15 18 C -0.09 -3.57 9.61 22.29 0.21 -3.36 15 19 C -0.13 -5.46 5.24 -19.57 -0.10 -5.56 15 20 H 0.26 14.18 8.31 -92.71 -0.77 13.41 15 21 H 0.36 16.70 9.08 -74.06 -0.67 16.03 15 22 H 0.05 2.67 7.92 -2.39 -0.02 2.65 15 23 H 0.05 2.79 8.09 -2.39 -0.02 2.77 15 24 H 0.09 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.76 15 27 H 0.41 5.34 9.06 -74.06 -0.67 4.67 15 28 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 29 H 0.12 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -64.72 253.39 0.68 -64.04 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.16 Total: 25.07 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 1.62 Total: -39.47 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.26 Total: -50.34 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -3.06 Total: -44.34 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -64.72 0.68 -64.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.669 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds