Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47006 * 270.00131 * 3 2 1 5 5 H 1.48502 * 109.47286 * 29.99952 * 3 2 1 6 6 H 1.48499 * 109.47023 * 150.00068 * 3 2 1 7 7 C 1.37870 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00011 * 185.02235 * 7 2 1 9 9 C 1.50702 * 120.00031 * 5.02286 * 7 2 1 10 10 O 1.42900 * 110.26828 * 54.85585 * 9 7 2 11 11 C 1.54343 * 110.30411 * 292.78297 * 9 7 2 12 12 C 1.54339 * 102.39618 * 214.60819 * 11 9 7 13 13 C 1.51391 * 105.17686 * 26.36897 * 12 11 9 14 14 C 1.38545 * 130.32683 * 162.81887 * 13 12 11 15 15 C 1.38003 * 120.29441 * 179.97438 * 14 13 12 16 16 C 1.38752 * 119.87593 * 359.97438 * 15 14 13 17 17 O 1.35903 * 120.08965 * 180.02562 * 16 15 14 18 18 C 1.38603 * 119.81497 * 0.02562 * 16 15 14 19 19 C 1.38258 * 109.73923 * 342.80080 * 13 12 11 20 20 H 0.96992 * 120.00098 * 0.02562 * 1 2 3 21 21 H 0.96700 * 113.99840 * 57.92605 * 10 9 7 22 22 H 1.09005 * 110.81671 * 332.83111 * 11 9 7 23 23 H 1.08991 * 110.82244 * 96.18480 * 11 9 7 24 24 H 1.09001 * 110.30546 * 145.29082 * 12 11 9 25 25 H 1.08998 * 110.30586 * 267.34791 * 12 11 9 26 26 H 1.07996 * 119.85186 * 359.97438 * 14 13 12 27 27 H 1.07995 * 120.06344 * 179.97438 * 15 14 13 28 28 H 0.96703 * 113.99523 * 90.00760 * 17 16 15 29 29 H 1.08000 * 119.90982 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1957 0.0824 9 6 1.2555 -2.4967 -0.1132 10 8 0.4255 -2.4905 -1.2764 11 6 0.4036 -2.7367 1.1513 12 6 0.4737 -4.2701 1.3118 13 6 1.7746 -4.6784 0.6541 14 6 2.5060 -5.8499 0.7642 15 6 3.6824 -6.0051 0.0596 16 6 4.1349 -4.9837 -0.7634 17 8 5.2926 -5.1321 -1.4596 18 6 3.4030 -3.8119 -0.8734 19 6 2.2239 -3.6591 -0.1649 20 1 -0.4850 0.8400 -0.0004 21 1 0.9069 -2.3438 -2.1022 22 1 0.8422 -2.2363 2.0146 23 1 -0.6234 -2.4070 0.9948 24 1 0.4830 -4.5398 2.3679 25 1 -0.3704 -4.7420 0.8090 26 1 2.1539 -6.6453 1.4044 27 1 4.2497 -6.9197 0.1486 28 1 5.1764 -5.5202 -2.3377 29 1 3.7540 -3.0158 -1.5132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260742820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = -91.905987 kcal Electronic energy + Delta-G solvation = -14883.880649 eV Core-core repulsion = 12349.853352 eV Total energy + Delta-G solvation = -2534.027297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18343 -38.95327 -36.80245 -34.36666 -34.17760 -31.87310 -29.17805 -28.40496 -25.58963 -23.52416 -21.93494 -21.36173 -19.16987 -18.81071 -17.17184 -16.72090 -16.43224 -16.24772 -15.83741 -15.02929 -14.79872 -14.48957 -14.09440 -13.34417 -13.17538 -13.14994 -12.81572 -12.65662 -12.31538 -12.18383 -12.08083 -11.78402 -11.68185 -10.93332 -10.55000 -10.17003 -9.70213 -9.21330 -8.10838 -6.33362 0.38360 0.51059 1.37934 1.39860 1.49346 2.38841 2.77140 3.13808 3.32160 3.74390 3.97155 4.16207 4.18886 4.44448 4.52989 4.57113 4.79471 4.88315 5.09315 5.13601 5.33623 5.42064 5.52018 5.56613 5.68116 5.72737 5.96417 6.00974 6.17254 6.71124 6.91864 7.30712 7.52167 8.91075 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.010521 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.238676 B = 2660.743592 C = 3225.942514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.038 3.962 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.046 0.954 9 C 0.275 3.725 10 O -0.565 6.565 11 C -0.080 4.080 12 C -0.075 4.075 13 C -0.117 4.117 14 C -0.095 4.095 15 C -0.148 4.148 16 C 0.092 3.908 17 O -0.506 6.506 18 C -0.142 4.142 19 C -0.102 4.102 20 H 0.261 0.739 21 H 0.356 0.644 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.407 0.593 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -10.615 -0.602 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.064 0.936 9 C 0.236 3.764 10 O -0.369 6.369 11 C -0.118 4.118 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.166 4.166 16 C 0.048 3.952 17 O -0.319 6.319 18 C -0.161 4.161 19 C -0.103 4.103 20 H 0.070 0.930 21 H 0.201 0.799 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.171 0.829 27 H 0.175 0.825 28 H 0.265 0.735 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.277 -10.370 0.353 11.223 hybrid contribution 0.616 1.323 -0.991 1.764 sum 4.893 -9.047 -0.638 10.305 Atomic orbital electron populations 1.70182 1.06957 1.27075 1.47727 1.25667 0.95463 1.01888 0.93516 0.85734 0.78720 0.79801 0.78369 1.19895 1.20589 1.19893 1.21779 0.93052 0.92289 1.54136 0.93604 1.18296 0.85260 0.88699 0.84193 1.86463 1.38926 1.94983 1.16539 1.21891 0.99817 0.93698 0.96434 1.21102 0.93920 0.95611 1.00591 1.20988 0.97609 0.94579 0.98543 1.20780 0.94122 0.96524 0.99813 1.21470 0.96858 0.99438 0.98862 1.18364 0.86699 0.93278 0.96907 1.84756 1.27407 1.85727 1.33996 1.20983 0.94670 0.98350 1.02097 1.21643 0.95161 0.97701 0.95749 0.93009 0.79943 0.93016 0.92617 0.89251 0.90291 0.82865 0.82531 0.73497 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.82 12.03 21.45 0.26 -50.56 15 2 C 0.04 2.11 5.29 84.65 0.45 2.56 15 3 Si 0.95 43.62 29.54 68.60 2.03 45.65 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.57 -31.86 7.96 25.60 0.20 -31.66 15 8 H 0.05 2.59 7.60 -2.91 -0.02 2.56 15 9 C 0.27 13.93 0.80 -11.61 -0.01 13.92 15 10 O -0.57 -29.46 12.32 -148.98 -1.84 -31.30 15 11 C -0.08 -3.86 5.55 31.50 0.17 -3.69 15 12 C -0.08 -2.84 6.77 30.52 0.21 -2.64 15 13 C -0.12 -4.47 6.14 -19.57 -0.12 -4.59 15 14 C -0.09 -2.85 10.03 22.29 0.22 -2.63 15 15 C -0.15 -4.24 9.99 22.34 0.22 -4.01 15 16 C 0.09 3.03 6.70 22.48 0.15 3.18 15 17 O -0.51 -14.06 13.51 -92.46 -1.25 -15.30 15 18 C -0.14 -5.73 9.58 22.40 0.21 -5.51 15 19 C -0.10 -4.51 5.25 -19.60 -0.10 -4.61 15 20 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 21 H 0.36 16.87 9.07 -74.06 -0.67 16.20 15 22 H 0.05 2.57 7.91 -2.38 -0.02 2.56 15 23 H 0.06 2.89 7.95 -2.39 -0.02 2.87 15 24 H 0.09 2.82 8.14 -2.39 -0.02 2.80 15 25 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 26 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.16 3.34 8.06 -2.91 -0.02 3.31 15 28 H 0.41 6.83 9.06 -74.06 -0.67 6.16 15 29 H 0.11 4.57 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -66.29 253.13 0.65 -65.64 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.16 Total: 25.53 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 1.61 Total: -39.66 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.26 Total: -50.56 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -3.08 Total: -46.60 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.29 0.65 -65.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260742820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.265 kcal (2) G-P(sol) polarization free energy of solvation -66.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds