Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48505 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47069 * 299.99647 * 3 2 1 6 6 H 1.48495 * 109.47008 * 59.99997 * 3 2 1 7 7 C 1.37881 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00553 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99794 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.34548 * 60.67076 * 9 7 2 11 11 C 1.54337 * 110.30317 * 182.79789 * 9 7 2 12 12 C 1.54339 * 102.39670 * 92.55075 * 11 9 7 13 13 C 1.51391 * 105.17534 * 26.36984 * 12 11 9 14 14 C 1.38548 * 130.32702 * 162.79817 * 13 12 11 15 15 C 1.38000 * 120.29188 * 180.02562 * 14 13 12 16 16 C 1.38755 * 119.88066 * 359.97438 * 15 14 13 17 17 O 1.35896 * 120.09365 * 179.97438 * 16 15 14 18 18 C 1.38598 * 119.81411 * 0.25165 * 16 15 14 19 19 C 1.38264 * 109.73978 * 342.80700 * 13 12 11 20 20 H 0.97006 * 119.99771 * 0.02562 * 1 2 3 21 21 H 0.96698 * 114.00010 * 299.32067 * 10 9 7 22 22 H 1.08999 * 110.82137 * 210.77928 * 11 9 7 23 23 H 1.09001 * 110.82451 * 334.12956 * 11 9 7 24 24 H 1.09002 * 110.30586 * 267.44538 * 12 11 9 25 25 H 1.09001 * 110.30291 * 145.29290 * 12 11 9 26 26 H 1.07999 * 119.85692 * 0.02562 * 14 13 12 27 27 H 1.07998 * 120.06309 * 179.97438 * 15 14 13 28 28 H 0.96700 * 114.00170 * 90.00320 * 17 16 15 29 29 H 1.07995 * 119.91977 * 179.74423 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4346 -2.6015 -1.1679 11 6 2.2351 -3.6859 0.0718 12 6 2.3306 -3.9464 1.5901 13 6 1.0208 -3.4462 2.1611 14 6 0.4207 -3.6999 3.3839 15 6 -0.7953 -3.1262 3.6949 16 6 -1.4199 -2.2911 2.7796 17 8 -2.6176 -1.7242 3.0811 18 6 -0.8216 -2.0412 1.5546 19 6 0.4002 -2.6146 1.2474 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2327 -1.9058 -1.2437 22 1 1.8313 -4.5558 -0.4459 23 1 3.2063 -3.4091 -0.3386 24 1 3.1659 -3.3915 2.0173 25 1 2.4452 -5.0128 1.7844 26 1 0.9066 -4.3495 4.0968 27 1 -1.2599 -3.3268 4.6489 28 1 -2.5470 -0.8645 3.5182 29 1 -1.3082 -1.3948 0.8393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260742822.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -90.942175 kcal Electronic energy + Delta-G solvation = -15179.729847 eV Core-core repulsion = 12645.744344 eV Total energy + Delta-G solvation = -2533.985503 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07480 -38.86905 -36.76199 -34.54601 -34.19804 -31.36421 -29.29047 -28.29821 -25.62842 -23.44907 -21.87349 -21.23862 -19.17274 -18.78117 -17.11075 -16.97509 -16.29043 -16.09881 -15.53642 -15.49075 -14.71353 -14.25913 -13.84510 -13.44051 -13.12364 -13.03917 -12.82147 -12.48035 -12.32457 -12.19927 -12.02935 -11.96360 -11.49991 -11.20262 -10.65119 -10.16136 -9.41679 -9.04962 -8.16180 -6.39127 0.54167 0.76764 1.37193 1.40774 1.50560 2.35744 2.91185 3.06385 3.49640 3.82525 4.02970 4.15444 4.37311 4.48093 4.60698 4.70404 4.91106 4.96094 5.17552 5.22919 5.25319 5.34327 5.57681 5.64911 5.65892 5.88613 6.10094 6.15901 6.23330 6.67514 6.97103 7.30207 7.38996 8.79658 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.013874 C = 0.010882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.857855 B = 2017.661613 C = 2572.409521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.259 3.741 10 O -0.599 6.599 11 C -0.105 4.105 12 C -0.059 4.059 13 C -0.136 4.136 14 C -0.105 4.105 15 C -0.163 4.163 16 C 0.068 3.932 17 O -0.509 6.509 18 C -0.123 4.123 19 C -0.077 4.077 20 H 0.268 0.732 21 H 0.373 0.627 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.398 0.602 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -3.352 6.739 7.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.220 3.780 10 O -0.407 6.407 11 C -0.143 4.143 12 C -0.096 4.096 13 C -0.136 4.136 14 C -0.123 4.123 15 C -0.181 4.181 16 C 0.024 3.976 17 O -0.320 6.320 18 C -0.142 4.142 19 C -0.077 4.077 20 H 0.078 0.922 21 H 0.221 0.779 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.255 0.745 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.930 -4.268 6.367 7.721 hybrid contribution -0.059 2.243 0.076 2.245 sum 0.871 -2.025 6.442 6.809 Atomic orbital electron populations 1.69715 1.06665 1.27672 1.49621 1.25718 0.95880 1.02240 0.93322 0.85477 0.79028 0.79352 0.77561 1.19457 1.20449 1.20713 1.21901 0.93533 0.91497 1.51720 0.92155 1.18705 0.86298 0.93550 0.79446 1.86155 1.52050 1.55361 1.47177 1.22259 0.98776 0.96788 0.96446 1.20862 0.93772 1.01476 0.93473 1.20963 0.98059 0.99257 0.95316 1.20632 0.95071 1.00966 0.95642 1.21349 0.96099 1.00658 1.00005 1.18605 0.86548 0.98588 0.93909 1.84703 1.26172 1.39390 1.81773 1.21490 0.95660 0.99330 0.97751 1.21500 0.93360 0.93480 0.99406 0.92197 0.77853 0.91869 0.90767 0.90054 0.88675 0.83268 0.83589 0.74489 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.08 8.14 21.45 0.17 -46.90 15 2 C 0.03 1.54 5.25 84.66 0.44 1.98 15 3 Si 0.96 41.94 29.54 68.60 2.03 43.97 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.55 -29.35 8.24 25.60 0.21 -29.14 15 8 H 0.06 3.19 7.57 -2.91 -0.02 3.17 15 9 C 0.26 13.12 0.92 -11.62 -0.01 13.11 15 10 O -0.60 -32.47 13.03 -148.98 -1.94 -34.41 15 11 C -0.11 -4.43 6.30 31.50 0.20 -4.23 15 12 C -0.06 -2.12 6.76 30.52 0.21 -1.91 15 13 C -0.14 -5.58 6.14 -19.56 -0.12 -5.70 15 14 C -0.11 -3.67 10.03 22.29 0.22 -3.44 15 15 C -0.16 -5.74 9.99 22.34 0.22 -5.52 15 16 C 0.07 2.77 6.70 22.48 0.15 2.92 15 17 O -0.51 -18.34 13.50 -92.38 -1.25 -19.59 15 18 C -0.12 -5.93 8.61 22.40 0.19 -5.74 15 19 C -0.08 -3.71 4.80 -19.60 -0.09 -3.80 15 20 H 0.27 13.39 8.31 -92.70 -0.77 12.62 15 21 H 0.37 20.54 7.22 -74.06 -0.53 20.00 15 22 H 0.06 2.56 8.11 -2.39 -0.02 2.54 15 23 H 0.07 2.99 7.74 -2.39 -0.02 2.97 15 24 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.15 4.12 8.06 -2.91 -0.02 4.09 15 28 H 0.40 10.63 9.06 -74.06 -0.67 9.96 15 29 H 0.13 6.73 6.03 -2.91 -0.02 6.71 15 Total: -1.00 -61.17 245.73 0.62 -60.55 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.02 Total: 37.87 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 1.63 Total: -41.48 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.17 Total: -46.90 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -3.19 Total: -54.00 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -61.17 0.62 -60.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260742822.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.390 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds