Wall clock time and date at job start Mon Mar 30 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38321 * 119.72311 * 2 1 4 4 C 1.38029 * 119.28784 * 179.76096 * 3 2 1 5 5 C 1.38814 * 120.16150 * 0.37149 * 4 3 2 6 6 C 1.38885 * 121.15355 * 359.80503 * 5 4 3 7 7 C 1.37690 * 119.73308 * 180.02562 * 2 1 3 8 8 C 1.50867 * 115.38405 * 179.84482 * 6 5 4 9 9 H 1.09002 * 109.27134 * 140.50780 * 8 6 5 10 10 C 1.50697 * 109.27306 * 260.00878 * 8 6 5 11 11 H 1.08002 * 119.99864 * 0.02562 * 10 8 6 12 12 C 1.37876 * 120.00175 * 179.97438 * 10 8 6 13 13 N 1.31509 * 120.00027 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99809 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46864 * 90.00529 * 14 12 10 16 16 H 1.48504 * 109.46738 * 210.00170 * 14 12 10 17 17 H 1.48496 * 109.47244 * 330.00199 * 14 12 10 18 18 C 1.54129 * 110.54036 * 20.30110 * 8 6 5 19 19 S 1.77438 * 130.57304 * 180.10947 * 5 4 3 20 20 H 1.08998 * 109.46947 * 269.96929 * 1 2 3 21 21 H 1.08994 * 109.47584 * 29.97636 * 1 2 3 22 22 H 1.09004 * 109.46847 * 149.97450 * 1 2 3 23 23 H 1.07996 * 120.35904 * 359.91791 * 3 2 1 24 24 H 1.08004 * 119.91690 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.46907 * 359.97438 * 7 2 1 26 26 H 0.96997 * 119.99851 * 180.02562 * 13 12 10 27 27 H 1.09005 * 111.09984 * 89.77743 * 18 8 6 28 28 H 1.09007 * 111.09927 * 213.86710 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2012 0.0000 4 6 3.5731 1.1907 0.0050 5 6 4.2614 -0.0147 0.0022 6 6 3.5856 -1.2280 -0.0016 7 6 2.1899 -1.1956 -0.0005 8 6 4.4616 -2.4563 -0.0080 9 1 4.0251 -3.2129 0.6441 10 6 4.5471 -2.9989 -1.4113 11 1 4.0214 -2.5041 -2.2145 12 6 5.2975 -4.1263 -1.6699 13 7 5.9381 -4.7285 -0.6920 14 14 5.4041 -4.7984 -3.4096 15 1 6.5543 -4.1745 -4.1116 16 1 5.5933 -6.2705 -3.3607 17 1 4.1494 -4.4845 -4.1393 18 6 5.8785 -2.1126 0.4918 19 16 6.0041 -0.3486 0.0097 20 1 -0.3633 -0.0006 1.0277 21 1 -0.3634 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 1.6542 2.1373 -0.0013 24 1 4.1188 2.1227 0.0055 25 1 1.6369 -2.1234 -0.0005 26 1 6.4663 -5.5214 -0.8740 27 1 5.9524 -2.2300 1.5730 28 1 6.6312 -2.7135 -0.0187 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260920479.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:08 Heat of formation + Delta-G solvation = -1.848256 kcal Electronic energy + Delta-G solvation = -12471.296826 eV Core-core repulsion = 10383.927596 eV Total energy + Delta-G solvation = -2087.369230 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.32906 -36.73970 -34.02998 -32.77163 -30.33068 -27.82777 -27.26665 -24.27953 -23.06266 -21.00987 -18.52258 -18.42486 -16.76900 -16.47722 -15.58223 -15.45760 -15.32619 -14.50251 -14.28176 -13.97367 -13.53016 -13.33057 -12.98638 -12.93117 -12.72081 -12.66233 -12.32117 -12.00449 -11.51396 -11.47204 -11.04259 -10.59784 -10.16913 -9.59179 -8.33685 -8.07106 -6.37263 0.37613 0.51399 0.95024 1.38224 1.40116 1.49771 1.56189 2.36643 2.82746 3.04621 3.87747 4.06980 4.11857 4.43595 4.44335 4.52511 4.62231 4.76819 4.87246 4.92900 5.17946 5.18884 5.26733 5.30938 5.48588 5.63734 5.68130 5.78867 6.06229 6.16947 6.66450 7.30846 8.82387 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.029950 B = 0.010526 C = 0.008731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.654412 B = 2659.438798 C = 3206.358468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.095 4.095 5 C -0.107 4.107 6 C -0.084 4.084 7 C -0.120 4.120 8 C 0.068 3.932 9 H 0.023 0.977 10 C -0.515 4.515 11 H 0.046 0.954 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.958 3.042 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.271 1.271 18 C -0.041 4.041 19 S -0.206 6.206 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.166 0.834 24 H 0.140 0.860 25 H 0.115 0.885 26 H 0.268 0.732 27 H 0.068 0.932 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 8.877 1.596 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.118 4.118 5 C -0.220 4.220 6 C -0.089 4.089 7 C -0.140 4.140 8 C 0.049 3.951 9 H 0.041 0.959 10 C -0.553 4.553 11 H 0.065 0.935 12 C -0.179 4.179 13 N -0.551 5.551 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.189 4.189 19 S 0.035 5.965 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.183 0.817 24 H 0.158 0.842 25 H 0.133 0.867 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.341 9.372 1.402 11.402 hybrid contribution -0.432 -1.646 -0.520 1.779 sum -6.773 7.726 0.882 10.312 Atomic orbital electron populations 1.20802 0.88394 1.03661 1.03275 1.20087 0.97910 0.92054 0.99163 1.21242 0.92503 0.98667 1.00928 1.20673 0.94851 0.95169 1.01141 1.22246 0.95279 0.96948 1.07490 1.21416 0.95512 0.94147 0.97840 1.20872 0.92005 0.98794 1.02318 1.18165 0.88844 0.90912 0.97174 0.95902 1.21064 1.30586 1.10742 0.92882 0.93523 1.25664 0.94707 0.96429 1.01071 1.69977 1.31691 1.20442 1.33010 0.85549 0.78636 0.77595 0.79943 1.20103 1.20169 1.19520 1.24287 1.03674 0.89823 1.01146 1.85170 1.06058 1.16730 1.88539 0.89919 0.89427 0.91711 0.81695 0.84213 0.86725 0.92299 0.91306 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.00 71.24 0.71 -1.49 15 2 C -0.09 -2.73 5.86 -19.97 -0.12 -2.85 15 3 C -0.11 -3.21 9.72 22.24 0.22 -2.99 15 4 C -0.09 -3.19 10.05 22.36 0.22 -2.97 15 5 C -0.11 -4.57 6.48 22.56 0.15 -4.43 15 6 C -0.08 -3.85 5.16 -19.33 -0.10 -3.95 15 7 C -0.12 -4.68 9.61 22.47 0.22 -4.47 15 8 C 0.07 3.55 2.52 -11.85 -0.03 3.52 15 9 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 10 C -0.52 -28.66 8.51 25.60 0.22 -28.44 15 11 H 0.05 2.66 7.73 -2.91 -0.02 2.64 15 12 C 0.02 1.14 5.07 84.66 0.43 1.57 15 13 N -0.91 -51.02 11.55 21.45 0.25 -50.77 15 14 Si 0.96 43.47 29.54 68.60 2.03 45.50 15 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 18 C -0.04 -2.03 6.61 72.36 0.48 -1.55 15 19 S -0.21 -9.25 23.06 -56.49 -1.30 -10.55 15 20 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.09 1.42 8.08 -2.39 -0.02 1.40 15 22 H 0.06 1.37 8.08 -2.38 -0.02 1.35 15 23 H 0.17 3.16 8.06 -2.91 -0.02 3.14 15 24 H 0.14 3.98 8.06 -2.91 -0.02 3.95 15 25 H 0.11 4.37 8.06 -2.91 -0.02 4.35 15 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 27 H 0.07 3.19 8.14 -2.38 -0.02 3.17 15 28 H 0.11 5.74 6.10 -2.38 -0.01 5.73 15 Total: -1.00 -60.93 251.95 4.51 -56.41 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.15 Total: 7.46 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 2.39 Total: -48.05 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.25 Total: -50.77 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.30 Total: -10.55 kcal Total: -60.93 4.51 -56.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920479.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.566 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds