Wall clock time and date at job start Mon Mar 30 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47004 * 299.99775 * 3 2 1 6 6 H 1.48492 * 109.47301 * 60.00042 * 3 2 1 7 7 C 1.37882 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99826 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.81307 * 59.47591 * 9 7 2 11 11 C 1.53444 * 109.94630 * 298.85273 * 9 7 2 12 12 C 1.50066 * 110.26915 * 190.99309 * 11 9 7 13 13 C 1.29447 * 124.07342 * 17.13033 * 12 11 9 14 14 C 1.50698 * 117.96125 * 179.52952 * 13 12 11 15 15 F 1.39903 * 109.46962 * 359.97438 * 14 13 12 16 16 F 1.39895 * 109.47381 * 119.97248 * 14 13 12 17 17 F 1.39900 * 109.46948 * 239.97598 * 14 13 12 18 18 C 1.50065 * 124.07677 * 359.49852 * 13 12 11 19 19 C 1.53028 * 110.14665 * 17.13776 * 18 13 12 20 20 H 0.97001 * 119.99488 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.31847 * 70.73676 * 11 9 7 22 22 H 1.09003 * 109.16089 * 311.15583 * 11 9 7 23 23 H 1.07996 * 117.96456 * 197.09760 * 12 11 9 24 24 H 1.09002 * 109.36102 * 256.92889 * 18 13 12 25 25 H 1.09004 * 109.35990 * 137.34172 * 18 13 12 26 26 H 1.09002 * 109.64314 * 70.24738 * 19 18 13 27 27 H 1.09002 * 109.64302 * 190.66569 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6148 -2.5593 -0.8814 11 6 0.3869 -2.6036 1.2654 12 6 -0.1549 -3.9954 1.4113 13 6 0.3167 -5.0264 0.7864 14 6 -0.3271 -6.3643 1.0443 15 9 -1.3691 -6.2107 1.9652 16 9 -0.8358 -6.8758 -0.1543 17 9 0.6258 -7.2483 1.5615 18 6 1.4641 -4.9720 -0.1792 19 6 2.2442 -3.6681 0.0021 20 1 -0.4849 0.8401 -0.0004 21 1 -0.4417 -1.8989 1.1950 22 1 0.9956 -2.3597 2.1362 23 1 -0.9898 -4.1464 2.0794 24 1 1.0814 -5.0254 -1.1985 25 1 2.1277 -5.8180 0.0002 26 1 2.7821 -3.6916 0.9498 27 1 2.9521 -3.5476 -0.8180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942504.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:12 Heat of formation + Delta-G solvation = -171.999609 kcal Electronic energy + Delta-G solvation = -15196.765204 eV Core-core repulsion = 12117.408046 eV Total energy + Delta-G solvation = -3079.357158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.14001 -48.66945 -48.56080 -39.43852 -35.11366 -32.53225 -31.42337 -27.92351 -25.54652 -24.09181 -22.24934 -19.63885 -19.41719 -19.23506 -18.54999 -17.97742 -16.55068 -15.63309 -15.50231 -15.06417 -15.00455 -14.87026 -14.78855 -14.74875 -14.45730 -14.06618 -13.80866 -13.27651 -13.13944 -12.77602 -12.55399 -12.29504 -12.06837 -11.39269 -10.89515 -10.73180 -10.50987 -10.12522 -8.10029 -6.21809 0.81606 1.42645 1.45933 1.56139 1.75271 2.45262 2.82926 3.11208 3.19678 3.45641 3.87667 4.33730 4.38658 4.53169 4.70220 4.89083 4.95876 5.05251 5.19882 5.29081 5.35745 5.61304 5.77450 5.97592 6.05253 6.37243 6.89865 7.47149 8.96580 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.060856 B = 0.007323 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.988341 B = 3822.558871 C = 4016.588432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.000 1.000 11 C -0.082 4.082 12 C -0.065 4.065 13 C -0.231 4.231 14 C 0.503 3.497 15 F -0.184 7.184 16 F -0.183 7.183 17 F -0.180 7.180 18 C -0.067 4.067 19 C -0.101 4.101 20 H 0.261 0.739 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.124 0.876 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -10.029 2.347 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.018 0.982 11 C -0.119 4.119 12 C -0.083 4.083 13 C -0.232 4.232 14 C 0.449 3.551 15 F -0.165 7.165 16 F -0.165 7.165 17 F -0.161 7.161 18 C -0.103 4.103 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.142 0.858 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.135 -9.961 2.355 10.236 hybrid contribution -0.060 0.830 0.040 0.833 sum 0.076 -9.131 2.395 9.440 Atomic orbital electron populations 1.70015 1.07150 1.27193 1.51474 1.25723 0.95618 1.02310 0.94760 0.85588 0.79195 0.79919 0.77440 1.19107 1.20977 1.20723 1.21575 0.93211 0.91797 1.50383 0.92544 1.18804 0.93123 0.92824 0.92915 0.98183 1.20617 1.00636 0.90919 0.99728 1.22798 0.96188 0.95345 0.93938 1.21263 1.03951 0.90842 1.07141 1.18748 0.76102 0.86609 0.73629 1.93112 1.60194 1.95644 1.67599 1.93170 1.87894 1.88842 1.46550 1.93167 1.64272 1.71541 1.87144 1.20262 0.93683 0.99449 0.96950 1.21570 0.97817 0.93280 1.01184 0.92982 0.90589 0.91814 0.85830 0.90627 0.89382 0.92534 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.32 11.58 21.45 0.25 -51.07 15 2 C 0.01 0.78 5.32 84.66 0.45 1.23 15 3 Si 0.95 42.25 29.54 68.60 2.03 44.28 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 7 C -0.53 -28.02 8.55 25.60 0.22 -27.80 15 8 H 0.06 2.92 7.75 -2.91 -0.02 2.90 15 9 C 0.04 1.99 2.15 -11.26 -0.02 1.97 15 10 H 0.00 0.00 8.13 -2.39 -0.02 -0.02 15 11 C -0.08 -3.63 5.08 29.80 0.15 -3.48 15 12 C -0.06 -2.36 9.26 27.03 0.25 -2.11 15 13 C -0.23 -7.79 5.32 -15.10 -0.08 -7.87 15 14 C 0.50 15.26 3.29 71.24 0.23 15.49 15 15 F -0.18 -5.52 15.59 44.97 0.70 -4.82 15 16 F -0.18 -5.57 17.24 44.97 0.78 -4.79 15 17 F -0.18 -5.22 17.07 44.97 0.77 -4.45 15 18 C -0.07 -2.18 5.74 29.66 0.17 -2.01 15 19 C -0.10 -3.89 5.23 30.74 0.16 -3.73 15 20 H 0.26 13.90 8.31 -92.71 -0.77 13.13 15 21 H 0.08 3.80 6.55 -2.39 -0.02 3.78 15 22 H 0.06 2.83 8.10 -2.39 -0.02 2.82 15 23 H 0.12 4.04 6.60 -2.91 -0.02 4.02 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.09 2.46 7.93 -2.38 -0.02 2.44 15 26 H 0.06 2.12 8.12 -2.39 -0.02 2.10 15 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -54.59 240.05 7.23 -47.36 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.18 Total: 1.81 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 1.53 Total: -28.31 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.25 Total: -51.07 kcal Atomic # 9 Polarization: -16.31 SS G_CDS: 2.24 Total: -14.07 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -54.59 7.23 -47.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942504.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.636 kcal (2) G-P(sol) polarization free energy of solvation -54.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds