Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.33921 * 125.34117 * 2 1 4 4 C 1.35011 * 111.56481 * 179.97438 * 3 2 1 5 5 C 1.40130 * 108.11686 * 359.97438 * 4 3 2 6 6 C 1.39058 * 120.36828 * 180.02562 * 5 4 3 7 7 C 1.37973 * 119.69576 * 359.93578 * 6 5 4 8 8 C 1.38558 * 120.16633 * 0.06953 * 7 6 5 9 9 C 1.38159 * 120.62450 * 359.95880 * 8 7 6 10 10 F 1.35100 * 120.01854 * 180.02562 * 9 8 7 11 11 C 1.38667 * 125.33995 * 180.26008 * 2 1 3 12 12 C 1.40959 * 127.30650 * 359.78619 * 11 2 1 13 13 H 1.08001 * 119.99857 * 30.63923 * 12 11 2 14 14 C 1.39777 * 119.99692 * 210.63941 * 12 11 2 15 15 N 1.31010 * 120.00135 * 19.07958 * 14 12 11 16 16 Si 1.86797 * 119.99715 * 199.07766 * 14 12 11 17 17 H 1.48501 * 109.47029 * 90.00291 * 16 14 12 18 18 H 1.48503 * 109.47126 * 210.00035 * 16 14 12 19 19 H 1.48503 * 109.47449 * 330.00158 * 16 14 12 20 20 H 1.08996 * 109.47244 * 356.10758 * 1 2 3 21 21 H 1.09002 * 109.47255 * 116.11077 * 1 2 3 22 22 H 1.09004 * 109.47017 * 236.10877 * 1 2 3 23 23 H 1.08000 * 120.15218 * 179.97438 * 6 5 4 24 24 H 1.08003 * 119.91234 * 180.02562 * 7 6 5 25 25 H 1.08001 * 119.68723 * 179.97438 * 8 7 6 26 26 H 0.96994 * 120.00218 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2816 1.0924 0.0000 4 6 3.5928 0.7709 0.0006 5 6 3.6989 -0.6264 0.0016 6 6 4.9485 -1.2366 0.0028 7 6 6.0886 -0.4595 0.0018 8 6 5.9893 0.9225 0.0009 9 6 4.7530 1.5393 0.0002 10 9 4.6704 2.8878 -0.0011 11 6 2.3090 -1.1311 -0.0051 12 6 1.8886 -2.4766 -0.0071 13 1 0.9580 -2.7508 -0.4816 14 6 2.6762 -3.4557 0.6052 15 7 3.5839 -3.1108 1.4846 16 14 2.4343 -5.2559 0.1693 17 1 3.3169 -5.6121 -0.9706 18 1 2.7764 -6.0996 1.3426 19 1 1.0175 -5.4874 -0.2106 20 1 -0.3633 1.0252 0.0698 21 1 -0.3634 -0.4523 -0.9228 22 1 -0.3633 -0.5731 0.8531 23 1 5.0261 -2.3138 0.0040 24 1 7.0608 -0.9298 0.0024 25 1 6.8868 1.5233 0.0005 26 1 4.1301 -3.7903 1.9097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -34.581038 kcal Electronic energy + Delta-G solvation = -14449.932587 eV Core-core repulsion = 11794.930781 eV Total energy + Delta-G solvation = -2655.001806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.09603 -40.76740 -36.66582 -34.11258 -31.30691 -29.95913 -28.98918 -27.04850 -24.69722 -21.93974 -20.84520 -19.75253 -17.49004 -16.42021 -15.74676 -15.34666 -15.10396 -14.70613 -14.22849 -14.18312 -13.51648 -12.75587 -12.31053 -12.02791 -11.94316 -11.70674 -11.36277 -11.17003 -10.95843 -10.87255 -10.72230 -10.21058 -9.86643 -9.21882 -8.47532 -7.56251 -7.03062 -6.65095 -4.34716 1.85130 2.24111 2.93178 3.06915 3.09706 3.63882 3.90843 3.97743 4.56437 5.06088 5.12744 5.56775 5.73007 6.04746 6.15322 6.20203 6.41685 6.48708 6.52564 6.76532 6.85023 7.02418 7.11064 7.29134 7.49640 7.56947 7.76527 8.20663 8.56864 8.69479 8.89322 10.20842 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.011674 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.509834 B = 2397.920587 C = 3188.705865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.190 4.190 3 O -0.196 6.196 4 C 0.019 3.981 5 C -0.090 4.090 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.139 4.139 9 C 0.071 3.929 10 F -0.153 7.153 11 C 0.061 3.939 12 C -0.453 4.453 13 H 0.084 0.916 14 C 0.079 3.921 15 N -0.802 5.802 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.262 1.262 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.131 0.869 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 0.737 -1.863 2.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.236 4.236 3 O -0.099 6.099 4 C -0.031 4.031 5 C -0.092 4.092 6 C -0.045 4.045 7 C -0.180 4.180 8 C -0.158 4.158 9 C 0.051 3.949 10 F -0.131 7.131 11 C 0.058 3.942 12 C -0.484 4.484 13 H 0.102 0.898 14 C -0.138 4.138 15 N -0.429 5.429 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.186 1.186 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.148 0.852 24 H 0.138 0.862 25 H 0.145 0.855 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.026 0.955 -1.696 2.809 hybrid contribution 0.112 -0.711 -0.019 0.720 sum 2.138 0.244 -1.715 2.752 Atomic orbital electron populations 1.19616 0.86714 1.00426 1.01275 1.22280 0.92230 0.82725 1.26352 1.83526 1.13185 1.35312 1.77878 1.19474 0.83663 0.94262 1.05736 1.19908 0.95564 0.90597 1.03145 1.20769 0.89856 1.00367 0.93496 1.20657 0.98300 0.92316 1.06747 1.20517 0.94109 0.95591 1.05599 1.16459 0.90893 0.75430 1.12101 1.91394 1.97111 1.29739 1.94901 1.18444 0.87137 0.93142 0.95484 1.18597 1.06945 0.89791 1.33069 0.89849 1.25787 0.93883 1.01290 0.92840 1.69945 1.18065 1.36283 1.18560 0.86346 0.79981 0.81733 0.78876 1.19354 1.20405 1.18636 0.93270 0.92545 0.91767 0.85171 0.86165 0.85479 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.48 10.15 36.00 0.37 -0.11 15 2 C -0.19 -4.77 7.41 -34.15 -0.25 -5.02 15 3 O -0.20 -5.08 10.52 4.74 0.05 -5.03 15 4 C 0.02 0.47 7.34 -38.53 -0.28 0.19 15 5 C -0.09 -2.33 5.80 -104.94 -0.61 -2.94 15 6 C -0.03 -0.61 8.78 -39.37 -0.35 -0.96 15 7 C -0.16 -3.15 10.04 -39.56 -0.40 -3.55 15 8 C -0.14 -2.69 9.99 -39.49 -0.39 -3.08 15 9 C 0.07 1.58 7.32 -39.27 -0.29 1.29 15 10 F -0.15 -3.28 17.27 2.25 0.04 -3.24 15 11 C 0.06 1.61 5.75 -104.76 -0.60 1.01 15 12 C -0.45 -11.71 9.05 -37.98 -0.34 -12.06 15 13 H 0.08 2.06 7.91 -52.49 -0.42 1.64 15 14 C 0.08 1.91 4.96 -17.33 -0.09 1.83 15 15 N -0.80 -20.08 10.24 55.54 0.57 -19.51 15 16 Si 0.91 18.16 29.60 -169.99 -5.03 13.12 15 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 19 H -0.26 -5.21 7.11 56.52 0.40 -4.80 15 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.13 3.01 6.30 -52.49 -0.33 2.68 15 24 H 0.12 1.91 8.06 -52.48 -0.42 1.49 15 25 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 26 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 LS Contribution 238.60 15.07 3.60 3.60 Total: -1.00 -27.94 238.60 -6.01 -33.95 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -1.99 Total: 0.51 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.24 Total: -23.40 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.57 Total: -19.51 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.05 Total: -5.03 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.94 -6.01 -33.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.628 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds