Wall clock time and date at job start Mon Mar 30 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.66880 * 56.76180 * 10 9 7 12 12 C 1.54700 * 110.75171 * 180.18083 * 10 9 7 13 13 C 1.51660 * 101.94142 * 143.62222 * 12 10 9 14 14 C 1.37736 * 132.11138 * 164.10820 * 13 12 10 15 15 C 1.38772 * 119.93665 * 180.96145 * 14 13 12 16 16 O 1.35986 * 120.17713 * 180.02562 * 15 14 13 17 17 C 1.38722 * 119.65015 * 0.03351 * 15 14 13 18 18 C 1.37908 * 120.29101 * 359.80560 * 17 15 14 19 19 C 1.38858 * 107.05015 * 344.63581 * 13 12 10 20 20 O 1.36247 * 111.21113 * 358.88356 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.08995 * 110.94172 * 261.78929 * 12 10 9 25 25 H 1.09004 * 110.93415 * 25.46807 * 12 10 9 26 26 H 1.08007 * 120.03189 * 1.00109 * 14 13 12 27 27 H 0.96695 * 114.00220 * 270.02127 * 16 15 14 28 28 H 1.08004 * 119.85056 * 179.78126 * 17 15 14 29 29 H 1.08002 * 119.84103 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9201 -3.5913 0.8525 12 6 1.5018 -5.0188 -0.0051 13 6 2.4008 -5.8663 -0.8847 14 6 2.4874 -7.2273 -1.0774 15 6 3.4368 -7.7446 -1.9473 16 8 3.5262 -9.0875 -2.1416 17 6 4.2943 -6.8845 -2.6176 18 6 4.2032 -5.5220 -2.4253 19 6 3.2491 -4.9968 -1.5575 20 8 2.9844 -3.7002 -1.2330 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.4397 -5.4323 1.0014 25 1 0.5097 -4.9177 -0.4451 26 1 1.8165 -7.8913 -0.5524 27 1 4.1300 -9.5338 -1.5323 28 1 5.0368 -7.2839 -3.2927 29 1 4.8748 -4.8590 -2.9506 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:58 Heat of formation + Delta-G solvation = -58.788282 kcal Electronic energy + Delta-G solvation = -14204.765336 eV Core-core repulsion = 11672.174130 eV Total energy + Delta-G solvation = -2532.591206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70625 -38.45985 -35.61270 -33.36064 -32.27969 -30.22618 -28.88615 -26.80626 -23.56485 -22.13550 -21.43002 -20.61124 -18.05094 -16.99364 -16.61236 -16.15072 -15.29790 -14.88667 -14.33282 -13.88757 -13.64840 -12.98606 -12.72767 -12.43820 -12.10148 -11.73246 -11.60210 -11.45147 -11.14003 -10.64726 -10.60190 -10.25275 -10.17559 -9.46567 -9.17643 -8.77640 -8.42145 -7.63594 -6.04968 -4.06845 1.40699 1.46075 3.33260 3.37153 3.40615 3.63820 3.93443 4.26916 4.43770 4.84494 4.99394 5.21959 5.32058 5.38444 5.47889 5.65070 5.77219 6.04931 6.10703 6.24294 6.42600 6.48228 6.53923 6.67225 6.70110 7.37540 7.52762 7.67058 7.82455 7.91808 8.30780 8.96906 9.56801 11.06479 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.065161 B = 0.006036 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.603466 B = 4637.820033 C = 4957.653507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.090 3.910 11 H 0.076 0.924 12 C -0.110 4.110 13 C -0.163 4.163 14 C -0.095 4.095 15 C 0.054 3.946 16 O -0.497 6.497 17 C -0.110 4.110 18 C -0.136 4.136 19 C 0.115 3.885 20 O -0.282 6.282 21 H 0.262 0.738 22 H 0.040 0.960 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.381 0.619 28 H 0.131 0.869 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -13.803 -0.987 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.035 3.965 11 H 0.094 0.906 12 C -0.147 4.147 13 C -0.164 4.164 14 C -0.114 4.114 15 C 0.009 3.991 16 O -0.306 6.306 17 C -0.129 4.129 18 C -0.155 4.155 19 C 0.068 3.932 20 O -0.195 6.195 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.143 0.857 27 H 0.235 0.765 28 H 0.149 0.851 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.047 -13.339 -1.538 14.726 hybrid contribution 0.652 0.697 0.432 1.047 sum 6.698 -12.642 -1.107 14.350 Atomic orbital electron populations 1.69939 1.06058 1.26940 1.50659 1.24998 0.94874 0.99355 0.95163 0.86588 0.79533 0.82791 0.78715 1.21284 1.20194 1.20141 1.21079 0.93213 0.90456 1.50815 0.92300 1.19320 0.92861 0.90430 0.98642 1.23829 0.93126 0.95743 0.83816 0.90576 1.22026 0.99280 0.94229 0.99187 1.20880 0.99242 0.93643 1.02598 1.20483 0.99124 0.93694 0.98072 1.18100 0.98315 0.83035 0.99604 1.84886 1.68435 1.16948 1.60328 1.21005 0.99198 0.92327 1.00338 1.20121 0.99102 0.94466 1.01841 1.19914 0.93079 0.85408 0.94831 1.87095 1.71153 1.20308 1.40923 0.92813 0.94165 0.95239 0.89692 0.89009 0.85652 0.76472 0.85119 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.89 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 15 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 7 C -0.52 -14.60 8.95 -34.44 -0.31 -14.90 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 9 C 0.02 0.61 4.68 -27.89 -0.13 0.48 15 10 C 0.09 1.89 3.55 -25.84 -0.09 1.80 15 11 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 12 C -0.11 -1.90 6.65 -26.52 -0.18 -2.07 15 13 C -0.16 -2.75 6.27 -104.10 -0.65 -3.40 15 14 C -0.10 -1.38 9.98 -39.57 -0.39 -1.78 15 15 C 0.05 0.73 6.71 -39.21 -0.26 0.47 15 16 O -0.50 -5.75 13.52 -19.70 -0.27 -6.02 15 17 C -0.11 -1.48 9.96 -39.52 -0.39 -1.87 15 18 C -0.14 -2.12 10.06 -39.32 -0.40 -2.51 15 19 C 0.11 2.13 7.03 -38.97 -0.27 1.85 15 20 O -0.28 -6.21 10.64 -20.53 -0.22 -6.42 15 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 22 H 0.04 1.03 8.14 -51.92 -0.42 0.61 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.09 1.59 7.92 -51.93 -0.41 1.18 15 26 H 0.13 1.56 8.06 -52.48 -0.42 1.14 15 27 H 0.38 2.46 9.06 45.56 0.41 2.88 15 28 H 0.13 1.40 8.06 -52.48 -0.42 0.98 15 29 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -31.68 257.39 -6.57 -38.25 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.50 Total: -0.12 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.18 Total: -20.40 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.48 Total: -12.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.68 -6.57 -38.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.542 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds