Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 110.67269 * 2 1 4 4 H 1.07998 * 119.99811 * 120.69502 * 3 2 1 5 5 C 1.37884 * 119.99844 * 300.70721 * 3 2 1 6 6 N 1.31509 * 119.99806 * 179.97438 * 5 3 2 7 7 Si 1.86793 * 119.99906 * 359.97438 * 5 3 2 8 8 H 1.48504 * 109.47278 * 90.00512 * 7 5 3 9 9 H 1.48510 * 109.47142 * 210.00291 * 7 5 3 10 10 H 1.48500 * 109.47527 * 329.99873 * 7 5 3 11 11 C 1.54699 * 110.75644 * 123.23126 * 2 1 3 12 12 C 1.51655 * 101.93865 * 143.58959 * 11 2 1 13 13 C 1.37878 * 132.11945 * 164.59040 * 12 11 2 14 14 C 1.38310 * 120.08068 * 180.37670 * 13 12 11 15 15 C 1.38286 * 119.80445 * 359.97438 * 14 13 12 16 16 C 1.38335 * 120.28443 * 359.82591 * 15 14 13 17 17 O 1.35997 * 119.92380 * 179.97438 * 16 15 14 18 18 C 1.38693 * 107.06116 * 344.61143 * 12 11 2 19 19 O 1.36225 * 111.26555 * 358.94156 * 18 12 11 20 20 H 1.09002 * 109.47153 * 296.76840 * 1 2 3 21 21 H 1.09001 * 109.46832 * 176.77031 * 1 2 3 22 22 H 1.09004 * 109.47261 * 56.77013 * 1 2 3 23 23 H 0.97001 * 120.00157 * 179.97438 * 6 5 3 24 24 H 1.09003 * 110.93816 * 261.74809 * 11 2 1 25 25 H 1.09002 * 110.93737 * 25.42651 * 11 2 1 26 26 H 1.07995 * 119.96305 * 0.36005 * 13 12 11 27 27 H 1.08000 * 120.10014 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.85920 * 179.85546 * 15 14 13 29 29 H 0.96706 * 113.99845 * 90.00053 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4100 0.0000 4 1 2.6993 1.7467 0.8043 5 6 1.7349 2.2703 -1.0267 6 7 2.1987 3.5009 -1.0264 7 14 0.6328 1.6878 -2.4179 8 1 -0.7858 1.9581 -2.0720 9 1 0.9850 2.4130 -3.6651 10 1 0.8233 0.2294 -2.6228 11 6 2.0782 -0.7928 1.2100 12 6 3.3060 -1.4583 0.6188 13 6 4.3938 -2.0748 1.1998 14 6 5.3971 -2.6021 0.4071 15 6 5.3054 -2.5095 -0.9696 16 6 4.2135 -1.8954 -1.5564 17 8 4.1312 -1.8080 -2.9111 18 6 3.1959 -1.3633 -0.7605 19 8 2.0395 -0.7407 -1.1221 20 1 -0.3633 0.4629 0.9175 21 1 -0.3633 -1.0261 -0.0579 22 1 -0.3634 0.5632 -0.8596 23 1 1.9689 4.1060 -1.7489 24 1 2.3529 -0.1212 2.0235 25 1 1.3565 -1.5366 1.5477 26 1 4.4628 -2.1458 2.2752 27 1 6.2495 -3.0847 0.8619 28 1 6.0894 -2.9189 -1.5894 29 1 3.6844 -2.5580 -3.3271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = -40.804297 kcal Electronic energy + Delta-G solvation = -15140.655015 eV Core-core repulsion = 12608.843653 eV Total energy + Delta-G solvation = -2531.811362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39420 -37.71662 -35.84996 -33.11834 -31.59868 -30.36186 -28.56188 -26.02217 -25.21297 -21.84162 -21.13443 -20.11281 -17.63073 -17.45254 -16.19896 -15.37950 -14.97091 -14.86352 -14.24229 -13.61996 -13.07057 -12.93331 -12.55864 -12.41834 -11.85672 -11.75774 -11.46904 -11.27919 -11.03684 -10.56080 -10.29192 -10.24508 -10.04516 -9.30122 -9.17049 -8.68862 -8.16007 -7.25796 -6.23273 -4.34292 1.72132 1.94446 3.26400 3.38984 3.56348 4.03051 4.34395 4.41772 4.72853 5.14570 5.22031 5.33553 5.57045 5.77758 5.86813 5.91587 6.05812 6.22078 6.33010 6.35989 6.54450 6.62109 6.76113 6.83960 6.96757 7.08174 7.24823 7.48391 7.90086 8.23370 8.39880 8.77550 9.38887 10.87014 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.032267 B = 0.012229 C = 0.010882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.560457 B = 2289.040540 C = 2572.420551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.189 3.811 3 C -0.534 4.534 4 H 0.082 0.918 5 C 0.088 3.912 6 N -0.881 5.881 7 Si 0.881 3.119 8 H -0.282 1.282 9 H -0.296 1.296 10 H -0.233 1.233 11 C -0.090 4.090 12 C -0.158 4.158 13 C -0.082 4.082 14 C -0.158 4.158 15 C -0.116 4.116 16 C 0.059 3.941 17 O -0.490 6.490 18 C 0.124 3.876 19 O -0.302 6.302 20 H 0.073 0.927 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.268 0.732 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 -12.106 1.737 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.154 3.846 3 C -0.571 4.571 4 H 0.100 0.900 5 C -0.118 4.118 6 N -0.516 5.516 7 Si 0.711 3.289 8 H -0.210 1.210 9 H -0.223 1.223 10 H -0.156 1.156 11 C -0.127 4.127 12 C -0.159 4.159 13 C -0.100 4.100 14 C -0.177 4.177 15 C -0.134 4.134 16 C 0.014 3.986 17 O -0.298 6.298 18 C 0.076 3.924 19 O -0.216 6.216 20 H 0.092 0.908 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.130 -11.370 1.534 11.528 hybrid contribution -0.650 -0.387 -0.730 1.051 sum 0.480 -11.756 0.804 11.794 Atomic orbital electron populations 1.22011 0.94867 0.99980 1.02352 1.20841 0.91781 0.91715 0.80300 1.21090 1.33161 0.92128 1.10689 0.89980 1.25026 0.94922 0.94253 0.97578 1.69902 1.43323 1.05562 1.32838 0.86959 0.79366 0.81551 0.81074 1.20976 1.22336 1.15626 1.21788 0.93231 0.97821 0.99836 1.20866 0.98096 1.02962 0.93956 1.20257 0.92757 0.97633 0.99397 1.20663 0.99768 1.04381 0.92865 1.20929 0.97330 0.99886 0.95300 1.17805 0.93353 1.05118 0.82357 1.84944 1.80649 1.47964 1.16203 1.20130 0.87742 0.91901 0.92647 1.87228 1.32259 1.60490 1.41611 0.90774 0.93875 0.92956 0.92200 0.89475 0.91164 0.86418 0.86034 0.85627 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.42 37.16 0.31 -2.53 15 2 C 0.19 4.50 0.68 -90.88 -0.06 4.44 15 3 C -0.53 -15.10 8.83 -34.43 -0.30 -15.41 15 4 H 0.08 2.50 7.84 -52.49 -0.41 2.09 15 5 C 0.09 2.58 5.45 -17.82 -0.10 2.48 15 6 N -0.88 -27.04 13.96 55.43 0.77 -26.27 15 7 Si 0.88 22.50 24.01 -169.99 -4.08 18.42 15 8 H -0.28 -6.82 6.86 56.52 0.39 -6.44 15 9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 15 10 H -0.23 -5.87 5.50 56.52 0.31 -5.56 15 11 C -0.09 -1.81 6.17 -26.52 -0.16 -1.97 15 12 C -0.16 -3.21 6.26 -104.12 -0.65 -3.86 15 13 C -0.08 -1.40 10.03 -39.69 -0.40 -1.80 15 14 C -0.16 -2.46 10.06 -39.54 -0.40 -2.85 15 15 C -0.12 -1.93 9.95 -39.53 -0.39 -2.32 15 16 C 0.06 1.18 6.72 -38.99 -0.26 0.92 15 17 O -0.49 -9.35 13.50 -19.74 -0.27 -9.61 15 18 C 0.12 2.80 6.89 -38.86 -0.27 2.53 15 19 O -0.30 -7.49 7.87 -20.47 -0.16 -7.65 15 20 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.05 1.17 3.27 -51.93 -0.17 1.00 15 23 H 0.27 7.72 8.31 -40.82 -0.34 7.38 15 24 H 0.09 1.73 7.77 -51.93 -0.40 1.32 15 25 H 0.07 1.22 7.92 -51.93 -0.41 0.81 15 26 H 0.12 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.12 1.47 8.06 -52.49 -0.42 1.04 15 28 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 29 H 0.37 5.07 9.07 45.56 0.41 5.48 15 LS Contribution 242.93 15.07 3.66 3.66 Total: -1.00 -32.98 242.93 -5.10 -38.08 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -2.34 Total: 3.76 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.68 Total: -20.38 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.27 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.43 Total: -17.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.08 Total: 18.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.98 -5.10 -38.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.726 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds