Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 110.81736 * 2 1 4 4 H 1.07999 * 119.99791 * 241.87623 * 3 2 1 5 5 C 1.37874 * 120.00063 * 61.87009 * 3 2 1 6 6 N 1.31515 * 119.99883 * 0.02562 * 5 3 2 7 7 Si 1.86808 * 120.00048 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.46626 * 90.00328 * 7 5 3 9 9 H 1.48497 * 109.46958 * 210.00301 * 7 5 3 10 10 H 1.48499 * 109.46881 * 330.00579 * 7 5 3 11 11 C 1.54701 * 110.75739 * 236.66498 * 2 1 3 12 12 C 1.51654 * 101.94553 * 216.41875 * 11 2 1 13 13 C 1.37879 * 132.12212 * 195.87473 * 12 11 2 14 14 C 1.38312 * 120.07375 * 179.00061 * 13 12 11 15 15 C 1.38278 * 119.81199 * 0.02562 * 14 13 12 16 16 C 1.38338 * 120.28438 * 0.19222 * 15 14 13 17 17 O 1.35996 * 119.92703 * 180.02562 * 16 15 14 18 18 C 1.38688 * 107.05677 * 15.35318 * 12 11 2 19 19 O 1.36235 * 111.26839 * 1.11314 * 18 12 11 20 20 H 1.09001 * 109.47206 * 298.12458 * 1 2 3 21 21 H 1.09004 * 109.47042 * 58.12396 * 1 2 3 22 22 H 1.09003 * 109.47403 * 178.12756 * 1 2 3 23 23 H 0.97005 * 119.99880 * 179.97438 * 6 5 3 24 24 H 1.09005 * 110.93437 * 98.25772 * 11 2 1 25 25 H 1.09005 * 110.96481 * 334.59748 * 11 2 1 26 26 H 1.07997 * 119.96088 * 359.02702 * 13 12 11 27 27 H 1.08001 * 120.09173 * 180.02562 * 14 13 12 28 28 H 1.07997 * 119.86033 * 180.17130 * 15 14 13 29 29 H 0.96700 * 113.99981 * 269.98491 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0655 1.4086 0.0000 4 1 2.6695 1.7567 -0.8249 5 6 1.7843 2.2531 1.0530 6 7 1.0491 1.8291 2.0576 7 14 2.4476 3.9994 1.0526 8 1 1.4688 4.9004 0.3928 9 1 2.6665 4.4460 2.4518 10 1 3.7346 4.0399 0.3129 11 6 2.0782 -0.7950 -1.2086 12 6 3.3059 -1.4596 -0.6162 13 6 4.3977 -2.0700 -1.1963 14 6 5.4058 -2.5866 -0.4027 15 6 5.3151 -2.4897 0.9737 16 6 4.2192 -1.8820 1.5595 17 8 4.1377 -1.7902 2.9140 18 6 3.1961 -1.3616 0.7628 19 8 2.0394 -0.7387 1.1234 20 1 -0.3634 0.4844 0.9063 21 1 -0.3633 0.5427 -0.8727 22 1 -0.3634 -1.0271 -0.0336 23 1 0.8516 2.4231 2.7987 24 1 2.3530 -0.1248 -2.0232 25 1 1.3566 -1.5392 -1.5456 26 1 4.4659 -2.1443 -2.2716 27 1 6.2613 -3.0644 -0.8568 28 1 6.1032 -2.8904 1.5940 29 1 3.6972 -2.5419 3.3334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068443.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -50.930804 kcal Electronic energy + Delta-G solvation = -15066.326183 eV Core-core repulsion = 12534.075703 eV Total energy + Delta-G solvation = -2532.250480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14579 -37.48216 -35.67382 -33.06232 -31.31683 -29.76365 -28.39901 -25.65898 -25.19749 -21.64705 -20.94164 -20.05528 -17.45187 -17.22444 -15.97788 -15.07200 -14.79224 -14.57813 -14.16389 -13.70098 -12.98775 -12.50440 -12.36454 -11.85176 -11.46030 -11.40724 -11.20487 -10.96676 -10.90587 -10.65410 -10.49437 -10.24890 -9.90488 -9.41106 -9.11725 -8.60873 -8.04868 -7.07258 -6.09893 -4.28638 1.83744 2.08681 3.25318 3.33183 3.36771 4.17377 4.33285 4.59010 4.88861 5.25577 5.33949 5.46782 5.74563 5.97115 6.00674 6.11163 6.25462 6.55875 6.63782 6.67775 6.84568 6.90773 6.96085 7.06509 7.18881 7.43199 7.62533 7.83411 8.09207 8.19198 8.54488 8.82672 9.44808 10.92131 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.011137 C = 0.010351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.236442 B = 2513.566554 C = 2704.447741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.228 3.772 3 C -0.546 4.546 4 H 0.065 0.935 5 C 0.083 3.917 6 N -0.856 5.856 7 Si 0.895 3.105 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.272 1.272 11 C -0.102 4.102 12 C -0.166 4.166 13 C -0.083 4.083 14 C -0.166 4.166 15 C -0.116 4.116 16 C 0.054 3.946 17 O -0.488 6.488 18 C 0.131 3.869 19 O -0.278 6.278 20 H 0.089 0.911 21 H 0.052 0.948 22 H 0.022 0.978 23 H 0.264 0.736 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -7.329 -3.509 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.193 3.807 3 C -0.583 4.583 4 H 0.083 0.917 5 C -0.124 4.124 6 N -0.491 5.491 7 Si 0.722 3.278 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.197 1.197 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.101 4.101 14 C -0.184 4.184 15 C -0.135 4.135 16 C 0.009 3.991 17 O -0.296 6.296 18 C 0.082 3.918 19 O -0.190 6.190 20 H 0.107 0.893 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.466 -6.708 -3.203 8.202 hybrid contribution 0.256 0.562 0.027 0.618 sum 3.722 -6.146 -3.176 7.855 Atomic orbital electron populations 1.21669 0.94638 0.98419 1.03554 1.20429 0.92221 0.89959 0.78115 1.21240 1.34965 0.95011 1.07098 0.91714 1.25030 0.93813 0.98619 0.94920 1.69956 1.35320 1.35740 1.08101 0.86556 0.79586 0.84121 0.77578 1.20299 1.20882 1.19678 1.22007 0.93296 0.98017 1.00621 1.20928 0.98118 1.03436 0.94211 1.20233 0.92839 0.97901 0.99172 1.20604 0.99832 1.05103 0.92890 1.20907 0.97371 0.99952 0.95244 1.17814 0.93236 1.05605 0.82452 1.84939 1.81001 1.47565 1.16100 1.20237 0.87855 0.91313 0.92437 1.87157 1.30898 1.59413 1.41519 0.89252 0.92875 0.95926 0.92600 0.90201 0.91551 0.86721 0.86295 0.85857 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.73 37.15 0.32 -2.61 15 2 C 0.23 5.76 0.75 -90.88 -0.07 5.69 15 3 C -0.55 -15.09 8.21 -34.44 -0.28 -15.37 15 4 H 0.06 1.77 7.59 -52.49 -0.40 1.37 15 5 C 0.08 2.32 5.30 -17.82 -0.09 2.22 15 6 N -0.86 -24.59 11.23 55.43 0.62 -23.97 15 7 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 15 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 11 C -0.10 -2.19 6.17 -26.52 -0.16 -2.36 15 12 C -0.17 -3.55 6.26 -104.12 -0.65 -4.20 15 13 C -0.08 -1.49 10.03 -39.69 -0.40 -1.88 15 14 C -0.17 -2.71 10.06 -39.54 -0.40 -3.11 15 15 C -0.12 -2.04 9.95 -39.53 -0.39 -2.43 15 16 C 0.05 1.14 6.72 -38.99 -0.26 0.88 15 17 O -0.49 -9.94 13.50 -19.74 -0.27 -10.21 15 18 C 0.13 3.13 6.89 -38.86 -0.27 2.86 15 19 O -0.28 -7.47 10.08 -20.50 -0.21 -7.67 15 20 H 0.09 2.31 6.39 -51.93 -0.33 1.98 15 21 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.02 0.46 8.11 -51.93 -0.42 0.04 15 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.08 1.64 7.76 -51.93 -0.40 1.23 15 25 H 0.07 1.27 7.90 -51.93 -0.41 0.86 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 29 H 0.37 5.59 9.06 45.56 0.41 6.00 15 LS Contribution 252.17 15.07 3.80 3.80 Total: -1.00 -31.51 252.17 -6.10 -37.62 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -2.38 Total: 4.32 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.65 Total: -20.31 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.62 Total: -23.97 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.47 Total: -17.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.51 -6.10 -37.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068443.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.313 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds