Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 110.81736 * 2 1 4 4 H 1.07999 * 119.99791 * 241.87623 * 3 2 1 5 5 C 1.37874 * 120.00063 * 61.87009 * 3 2 1 6 6 N 1.31515 * 119.99883 * 0.02562 * 5 3 2 7 7 Si 1.86808 * 120.00048 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.46626 * 90.00328 * 7 5 3 9 9 H 1.48497 * 109.46958 * 210.00301 * 7 5 3 10 10 H 1.48499 * 109.46881 * 330.00579 * 7 5 3 11 11 C 1.54701 * 110.75739 * 236.66498 * 2 1 3 12 12 C 1.51654 * 101.94553 * 216.41875 * 11 2 1 13 13 C 1.37879 * 132.12212 * 195.87473 * 12 11 2 14 14 C 1.38312 * 120.07375 * 179.00061 * 13 12 11 15 15 C 1.38278 * 119.81199 * 0.02562 * 14 13 12 16 16 C 1.38338 * 120.28438 * 0.19222 * 15 14 13 17 17 O 1.35996 * 119.92703 * 180.02562 * 16 15 14 18 18 C 1.38688 * 107.05677 * 15.35318 * 12 11 2 19 19 O 1.36235 * 111.26839 * 1.11314 * 18 12 11 20 20 H 1.09001 * 109.47206 * 298.12458 * 1 2 3 21 21 H 1.09004 * 109.47042 * 58.12396 * 1 2 3 22 22 H 1.09003 * 109.47403 * 178.12756 * 1 2 3 23 23 H 0.97005 * 119.99880 * 179.97438 * 6 5 3 24 24 H 1.09005 * 110.93437 * 98.25772 * 11 2 1 25 25 H 1.09005 * 110.96481 * 334.59748 * 11 2 1 26 26 H 1.07997 * 119.96088 * 359.02702 * 13 12 11 27 27 H 1.08001 * 120.09173 * 180.02562 * 14 13 12 28 28 H 1.07997 * 119.86033 * 180.17130 * 15 14 13 29 29 H 0.96700 * 113.99981 * 269.98491 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0655 1.4086 0.0000 4 1 2.6695 1.7567 -0.8249 5 6 1.7843 2.2531 1.0530 6 7 1.0491 1.8291 2.0576 7 14 2.4476 3.9994 1.0526 8 1 1.4688 4.9004 0.3928 9 1 2.6665 4.4460 2.4518 10 1 3.7346 4.0399 0.3129 11 6 2.0782 -0.7950 -1.2086 12 6 3.3059 -1.4596 -0.6162 13 6 4.3977 -2.0700 -1.1963 14 6 5.4058 -2.5866 -0.4027 15 6 5.3151 -2.4897 0.9737 16 6 4.2192 -1.8820 1.5595 17 8 4.1377 -1.7902 2.9140 18 6 3.1961 -1.3616 0.7628 19 8 2.0394 -0.7387 1.1234 20 1 -0.3634 0.4844 0.9063 21 1 -0.3633 0.5427 -0.8727 22 1 -0.3634 -1.0271 -0.0336 23 1 0.8516 2.4231 2.7987 24 1 2.3530 -0.1248 -2.0232 25 1 1.3566 -1.5392 -1.5456 26 1 4.4659 -2.1443 -2.2716 27 1 6.2613 -3.0644 -0.8568 28 1 6.1032 -2.8904 1.5940 29 1 3.6972 -2.5419 3.3334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068443.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -72.960212 kcal Electronic energy + Delta-G solvation = -15067.281450 eV Core-core repulsion = 12534.075703 eV Total energy + Delta-G solvation = -2533.205747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.77358 -39.08466 -37.18887 -35.04389 -33.08763 -31.44334 -29.90406 -27.48454 -27.07491 -23.15896 -22.46818 -21.90487 -19.16985 -18.94839 -17.57772 -16.89592 -16.40222 -16.27994 -15.86259 -15.35264 -14.66235 -14.22016 -13.86353 -13.58448 -13.33413 -13.11729 -12.84105 -12.77546 -12.65635 -12.30173 -12.20416 -12.10639 -11.51619 -11.17489 -10.98640 -10.66477 -9.50424 -8.72922 -8.14914 -6.41649 0.38024 0.59055 1.35088 1.37394 1.46710 2.34840 2.65285 2.95975 3.26010 3.42682 3.82221 4.06302 4.27870 4.48268 4.54858 4.65780 4.70184 4.84942 4.93945 5.02453 5.18859 5.30589 5.47304 5.53392 5.56515 5.70521 5.84585 6.01606 6.12160 6.53744 6.76360 7.04230 7.35567 8.84642 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.011137 C = 0.010351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.236442 B = 2513.566554 C = 2704.447741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.210 3.790 3 C -0.562 4.562 4 H 0.058 0.942 5 C 0.034 3.966 6 N -0.887 5.887 7 Si 0.953 3.047 8 H -0.262 1.262 9 H -0.285 1.285 10 H -0.272 1.272 11 C -0.095 4.095 12 C -0.180 4.180 13 C -0.084 4.084 14 C -0.144 4.144 15 C -0.113 4.113 16 C 0.036 3.964 17 O -0.509 6.509 18 C 0.074 3.926 19 O -0.316 6.316 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.262 0.738 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 -8.327 -5.017 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.174 3.826 3 C -0.599 4.599 4 H 0.076 0.924 5 C -0.170 4.170 6 N -0.523 5.523 7 Si 0.778 3.222 8 H -0.187 1.187 9 H -0.211 1.211 10 H -0.197 1.197 11 C -0.132 4.132 12 C -0.181 4.181 13 C -0.101 4.101 14 C -0.162 4.162 15 C -0.131 4.131 16 C -0.009 4.009 17 O -0.319 6.319 18 C 0.026 3.974 19 O -0.230 6.230 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.167 0.833 27 H 0.185 0.815 28 H 0.174 0.826 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.456 -7.725 -4.722 10.570 hybrid contribution -0.254 0.742 0.488 0.924 sum 5.202 -6.983 -4.234 9.682 Atomic orbital electron populations 1.21572 0.94212 0.99317 1.02498 1.20554 0.92789 0.89520 0.79688 1.21574 1.34666 0.96829 1.06832 0.92382 1.25795 0.94203 1.02278 0.94728 1.70099 1.36721 1.36834 1.08660 0.85649 0.79117 0.80086 0.77367 1.18702 1.21051 1.19702 1.21880 0.94053 0.98136 0.99085 1.21137 0.99215 1.04436 0.93301 1.20701 0.91645 0.96548 1.01243 1.21204 1.00196 1.02606 0.92185 1.21320 0.96571 0.98729 0.96465 1.18293 0.93864 1.06196 0.82555 1.84856 1.81355 1.49341 1.16374 1.20769 0.88367 0.93920 0.94371 1.87047 1.32836 1.60761 1.42399 0.92333 0.91618 0.94098 0.92856 0.89774 0.89603 0.83263 0.81476 0.82558 0.75039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.73 71.98 0.63 -5.05 15 2 C 0.21 10.81 0.75 -10.96 -0.01 10.80 15 3 C -0.56 -31.68 8.21 25.60 0.21 -31.47 15 4 H 0.06 3.23 7.59 -2.91 -0.02 3.20 15 5 C 0.03 1.91 5.30 84.65 0.45 2.35 15 6 N -0.89 -52.77 11.23 21.45 0.24 -52.53 15 7 Si 0.95 44.70 29.54 68.60 2.03 46.72 15 8 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 9 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 10 H -0.27 -12.62 7.11 99.48 0.71 -11.92 15 11 C -0.09 -4.00 6.17 30.73 0.19 -3.81 15 12 C -0.18 -7.47 6.26 -19.54 -0.12 -7.60 15 13 C -0.08 -2.67 10.03 22.20 0.22 -2.45 15 14 C -0.14 -4.00 10.06 22.30 0.22 -3.77 15 15 C -0.11 -3.57 9.95 22.30 0.22 -3.35 15 16 C 0.04 1.49 6.72 22.65 0.15 1.64 15 17 O -0.51 -20.78 13.50 -93.49 -1.26 -22.05 15 18 C 0.07 3.54 6.89 22.74 0.16 3.69 15 19 O -0.32 -17.59 10.08 -96.22 -0.97 -18.56 15 20 H 0.06 3.14 6.39 -2.39 -0.02 3.13 15 21 H 0.06 2.86 8.14 -2.38 -0.02 2.84 15 22 H 0.04 1.73 8.11 -2.39 -0.02 1.71 15 23 H 0.26 14.85 8.31 -92.70 -0.77 14.08 15 24 H 0.08 3.38 7.76 -2.38 -0.02 3.36 15 25 H 0.09 3.19 7.90 -2.38 -0.02 3.17 15 26 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 28 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 29 H 0.39 11.86 9.06 -74.06 -0.67 11.19 15 Total: -1.00 -70.34 252.17 2.85 -67.48 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.50 Total: 17.92 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.32 Total: -38.99 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.23 Total: -40.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.34 2.85 -67.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068443.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds