Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.66757 * 2 1 4 4 H 1.08004 * 119.99960 * 123.21619 * 3 2 1 5 5 C 1.37882 * 120.00257 * 303.22151 * 3 2 1 6 6 N 1.31509 * 119.99776 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 119.99851 * 179.97438 * 5 3 2 8 8 H 1.48498 * 109.47236 * 0.02562 * 7 5 3 9 9 H 1.48509 * 109.46735 * 119.99845 * 7 5 3 10 10 H 1.48497 * 109.47374 * 239.99715 * 7 5 3 11 11 C 1.54696 * 110.75165 * 123.22128 * 2 1 3 12 12 C 1.51658 * 101.94594 * 93.05167 * 11 2 1 13 13 C 1.37741 * 132.10955 * 195.50371 * 12 11 2 14 14 C 1.38781 * 119.93735 * 179.43543 * 13 12 11 15 15 O 1.35974 * 120.17404 * 179.97438 * 14 13 12 16 16 C 1.38715 * 119.64886 * 359.92348 * 14 13 12 17 17 C 1.37915 * 120.29119 * 0.20634 * 16 14 13 18 18 C 1.38855 * 107.05569 * 15.26579 * 12 11 2 19 19 O 1.36242 * 111.20799 * 1.26116 * 18 12 11 20 20 H 1.08998 * 109.47009 * 296.77995 * 1 2 3 21 21 H 1.09004 * 109.47090 * 56.78163 * 1 2 3 22 22 H 1.09000 * 109.47017 * 176.77834 * 1 2 3 23 23 H 0.97001 * 120.00004 * 180.02562 * 6 5 3 24 24 H 1.08994 * 110.93574 * 334.88823 * 11 2 1 25 25 H 1.09000 * 110.93939 * 211.21293 * 11 2 1 26 26 H 1.08000 * 120.03636 * 359.40691 * 13 12 11 27 27 H 0.96703 * 113.99686 * 269.96773 * 15 14 13 28 28 H 1.08002 * 119.85563 * 180.18288 * 16 14 13 29 29 H 1.08000 * 119.83994 * 179.76095 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4100 0.0000 4 1 2.7319 1.7344 0.7825 5 6 1.6931 2.2860 -0.9989 6 7 0.8776 1.8909 -1.9519 7 14 2.3519 4.0340 -0.9984 8 1 3.2444 4.2263 0.1728 9 1 3.1172 4.2748 -2.2481 10 1 1.2185 4.9902 -0.9200 11 6 2.0781 -0.7926 1.2102 12 6 2.2632 -2.1775 0.6206 13 6 2.4520 -3.4115 1.2027 14 6 2.5841 -4.5402 0.4061 15 8 2.7712 -5.7606 0.9757 16 6 2.5231 -4.4169 -0.9742 17 6 2.3366 -3.1797 -1.5545 18 6 2.2085 -2.0429 -0.7604 19 8 2.0394 -0.7404 -1.1223 20 1 -0.3633 0.4630 0.9174 21 1 -0.3633 0.5630 -0.8598 22 1 -0.3633 -1.0260 -0.0578 23 1 0.6185 2.5070 -2.6549 24 1 1.3541 -0.8096 2.0247 25 1 3.0303 -0.3818 1.5459 26 1 2.4978 -3.5006 2.2781 27 1 3.7000 -5.9924 1.1129 28 1 2.6225 -5.2934 -1.5972 29 1 2.2941 -3.0915 -2.6301 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089009.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -72.624370 kcal Electronic energy + Delta-G solvation = -14756.822151 eV Core-core repulsion = 12223.630967 eV Total energy + Delta-G solvation = -2533.191184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.83376 -39.47659 -36.70562 -35.08091 -33.50632 -31.38144 -29.81214 -27.70716 -26.98744 -23.28919 -22.55067 -21.93593 -19.21525 -18.59506 -17.84031 -16.92998 -16.61372 -16.16800 -15.79883 -15.04275 -14.75344 -14.51846 -14.00908 -13.64274 -13.48870 -13.14750 -13.00098 -12.82012 -12.49943 -12.33107 -12.20780 -12.09916 -11.47640 -11.11049 -10.93866 -10.66249 -9.82408 -8.67572 -8.17943 -6.45473 0.36357 0.42562 1.40840 1.43168 1.55088 2.36888 2.64375 2.78433 3.26403 3.41281 3.83077 3.96059 4.20967 4.38513 4.45996 4.54390 4.71358 4.82746 4.89688 5.04948 5.07682 5.25076 5.30624 5.45800 5.54790 5.64770 5.80849 5.96396 6.12119 6.53914 6.88211 6.99154 7.31841 8.83491 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.059006 B = 0.007683 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.414331 B = 3643.452587 C = 3771.280386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 C -0.546 4.546 4 H 0.071 0.929 5 C 0.032 3.968 6 N -0.890 5.890 7 Si 0.966 3.034 8 H -0.262 1.262 9 H -0.282 1.282 10 H -0.273 1.273 11 C -0.093 4.093 12 C -0.178 4.178 13 C -0.099 4.099 14 C 0.058 3.942 15 O -0.499 6.499 16 C -0.103 4.103 17 C -0.156 4.156 18 C 0.081 3.919 19 O -0.319 6.319 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.021 0.979 23 H 0.266 0.734 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.405 0.595 28 H 0.160 0.840 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -9.318 4.388 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.180 3.820 3 C -0.583 4.583 4 H 0.089 0.911 5 C -0.172 4.172 6 N -0.526 5.526 7 Si 0.790 3.210 8 H -0.186 1.186 9 H -0.208 1.208 10 H -0.198 1.198 11 C -0.130 4.130 12 C -0.179 4.179 13 C -0.118 4.118 14 C 0.014 3.986 15 O -0.311 6.311 16 C -0.122 4.122 17 C -0.175 4.175 18 C 0.033 3.967 19 O -0.234 6.234 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.161 0.839 27 H 0.263 0.737 28 H 0.178 0.822 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.949 -9.157 4.026 10.429 hybrid contribution 0.628 1.042 -0.188 1.231 sum 3.577 -8.115 3.838 9.663 Atomic orbital electron populations 1.21991 0.96561 0.98562 1.02763 1.20519 0.91616 0.90326 0.79576 1.21340 1.30994 0.94030 1.11927 0.91122 1.25910 0.93974 1.02965 0.94305 1.70059 1.33010 1.36818 1.12714 0.85399 0.78493 0.78828 0.78259 1.18621 1.20789 1.19836 1.21853 1.01777 0.90203 0.99140 1.21014 1.06640 0.96001 0.94273 1.20698 1.00384 0.89694 1.00975 1.18070 1.05449 0.84699 0.90405 1.84804 1.33112 1.30855 1.82328 1.21247 0.99720 0.96707 0.94496 1.20367 1.07472 0.89578 1.00056 1.20514 0.94827 0.87344 0.93972 1.87280 1.78693 1.14800 1.42611 0.92480 0.90937 0.95964 0.92507 0.89366 0.90391 0.83896 0.73672 0.82247 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.01 8.64 71.98 0.62 -6.39 15 2 C 0.21 11.02 0.75 -10.96 -0.01 11.01 15 3 C -0.55 -29.81 8.34 25.60 0.21 -29.59 15 4 H 0.07 3.72 7.62 -2.91 -0.02 3.70 15 5 C 0.03 1.73 5.30 84.66 0.45 2.18 15 6 N -0.89 -50.80 11.01 21.45 0.24 -50.57 15 7 Si 0.97 42.34 29.54 68.60 2.03 44.37 15 8 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 9 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 11 C -0.09 -3.97 6.16 30.73 0.19 -3.78 15 12 C -0.18 -7.24 6.26 -19.53 -0.12 -7.36 15 13 C -0.10 -3.27 9.98 22.28 0.22 -3.05 15 14 C 0.06 1.73 6.71 22.51 0.15 1.88 15 15 O -0.50 -11.68 13.51 -93.25 -1.26 -12.94 15 16 C -0.10 -3.11 9.96 22.31 0.22 -2.88 15 17 C -0.16 -5.81 10.06 22.44 0.23 -5.59 15 18 C 0.08 3.65 6.90 22.66 0.16 3.80 15 19 O -0.32 -17.38 10.36 -96.32 -1.00 -18.38 15 20 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 21 H 0.07 3.99 5.85 -2.39 -0.01 3.98 15 22 H 0.02 1.02 8.07 -2.39 -0.02 1.00 15 23 H 0.27 14.27 8.31 -92.71 -0.77 13.50 15 24 H 0.09 3.39 7.92 -2.39 -0.02 3.37 15 25 H 0.08 3.28 7.79 -2.39 -0.02 3.26 15 26 H 0.14 3.96 8.06 -2.91 -0.02 3.94 15 27 H 0.41 5.15 9.06 -74.06 -0.67 4.48 15 28 H 0.16 3.64 8.06 -2.91 -0.02 3.61 15 29 H 0.13 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -64.94 251.76 2.82 -62.12 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.50 Total: 15.16 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 2.32 Total: -39.76 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.24 Total: -50.57 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -2.26 Total: -31.32 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.94 2.82 -62.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089009.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.501 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds