Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50692 * 110.80878 * 2 1 4 4 H 1.08002 * 119.99540 * 241.85866 * 3 2 1 5 5 C 1.37871 * 120.00734 * 61.86179 * 3 2 1 6 6 N 1.31518 * 119.99786 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 120.00544 * 179.97438 * 5 3 2 8 8 H 1.48493 * 109.46882 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47083 * 119.99837 * 7 5 3 10 10 H 1.48493 * 109.46965 * 239.99766 * 7 5 3 11 11 C 1.54699 * 110.74656 * 236.67682 * 2 1 3 12 12 C 1.51651 * 101.93178 * 267.01176 * 11 2 1 13 13 C 1.37745 * 132.10792 * 164.27263 * 12 11 2 14 14 C 1.38766 * 119.93634 * 180.56431 * 13 12 11 15 15 O 1.35979 * 120.17738 * 180.20607 * 14 13 12 16 16 C 1.38725 * 119.64965 * 359.93707 * 14 13 12 17 17 C 1.37905 * 120.29136 * 359.84257 * 16 14 13 18 18 C 1.38857 * 107.05179 * 344.48910 * 12 11 2 19 19 O 1.36242 * 111.21717 * 359.10054 * 18 12 11 20 20 H 1.08997 * 109.46744 * 298.14098 * 1 2 3 21 21 H 1.08990 * 109.46850 * 58.14055 * 1 2 3 22 22 H 1.08994 * 109.46862 * 178.14096 * 1 2 3 23 23 H 0.97000 * 120.00417 * 180.02562 * 6 5 3 24 24 H 1.08997 * 110.94161 * 25.17601 * 11 2 1 25 25 H 1.09006 * 110.93204 * 148.81545 * 11 2 1 26 26 H 1.08004 * 120.02955 * 0.56564 * 13 12 11 27 27 H 0.96697 * 114.00589 * 269.72958 * 15 14 13 28 28 H 1.08004 * 119.85194 * 179.86416 * 16 14 13 29 29 H 1.08004 * 119.83937 * 180.09094 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0654 1.4086 0.0000 4 1 2.6696 1.7566 -0.8248 5 6 1.7840 2.2532 1.0528 6 7 1.0479 1.8296 2.0570 7 14 2.4483 3.9991 1.0531 8 1 3.2422 4.2268 -0.1809 9 1 1.3164 4.9593 1.0983 10 1 3.3146 4.1989 2.2424 11 6 2.0781 -0.7947 -1.2088 12 6 2.2615 -2.1789 -0.6169 13 6 2.4455 -3.4146 -1.1971 14 6 2.5771 -4.5418 -0.3986 15 8 2.7631 -5.7635 -0.9660 16 6 2.5235 -4.4151 0.9818 17 6 2.3437 -3.1761 1.5601 18 6 2.2118 -2.0411 0.7639 19 8 2.0393 -0.7384 1.1235 20 1 -0.3633 0.4847 0.9062 21 1 -0.3633 0.5424 -0.8728 22 1 -0.3633 -1.0271 -0.0333 23 1 0.8496 2.4238 2.7976 24 1 1.3545 -0.8123 -2.0238 25 1 3.0305 -0.3848 -1.5449 26 1 2.4873 -3.5059 -2.2724 27 1 1.9424 -6.2395 -1.1529 28 1 2.6233 -5.2906 1.6063 29 1 2.3045 -3.0856 2.6356 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -73.393016 kcal Electronic energy + Delta-G solvation = -14764.192032 eV Core-core repulsion = 12230.967517 eV Total energy + Delta-G solvation = -2533.224515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.82722 -39.46989 -36.69520 -35.01624 -33.51468 -31.41319 -29.80784 -27.69112 -26.98186 -23.28043 -22.55077 -21.92638 -19.19237 -18.62254 -17.83326 -16.90570 -16.53373 -16.27313 -15.67263 -15.03888 -14.83353 -14.46938 -13.99073 -13.67211 -13.51463 -13.07583 -12.95395 -12.82249 -12.55402 -12.37927 -12.23748 -12.10347 -11.43642 -11.07505 -10.94953 -10.66652 -9.82075 -8.66868 -8.18322 -6.43116 0.36840 0.43691 1.40404 1.42916 1.54507 2.37370 2.62118 2.84130 3.27303 3.39102 3.83626 3.96402 4.20971 4.38806 4.46591 4.54349 4.71388 4.82447 4.89445 5.04616 5.08344 5.24646 5.30236 5.46237 5.56854 5.65389 5.81401 5.90547 6.11408 6.53069 6.90079 7.00161 7.33437 8.85462 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.058284 B = 0.007743 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.294343 B = 3615.232768 C = 3749.530642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.215 3.785 3 C -0.550 4.550 4 H 0.071 0.929 5 C 0.033 3.967 6 N -0.889 5.889 7 Si 0.963 3.037 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.283 1.283 11 C -0.093 4.093 12 C -0.179 4.179 13 C -0.098 4.098 14 C 0.058 3.942 15 O -0.499 6.499 16 C -0.103 4.103 17 C -0.156 4.156 18 C 0.080 3.920 19 O -0.314 6.314 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.028 0.972 23 H 0.264 0.736 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.405 0.595 28 H 0.160 0.840 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -9.866 -4.706 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.180 3.820 3 C -0.586 4.586 4 H 0.089 0.911 5 C -0.171 4.171 6 N -0.525 5.525 7 Si 0.788 3.212 8 H -0.187 1.187 9 H -0.198 1.198 10 H -0.209 1.209 11 C -0.130 4.130 12 C -0.180 4.180 13 C -0.117 4.117 14 C 0.013 3.987 15 O -0.311 6.311 16 C -0.122 4.122 17 C -0.175 4.175 18 C 0.033 3.967 19 O -0.228 6.228 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.263 0.737 28 H 0.177 0.823 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.382 -9.543 -4.298 10.473 hybrid contribution -0.268 0.943 0.196 1.000 sum 0.113 -8.600 -4.102 9.528 Atomic orbital electron populations 1.21896 0.96392 0.98513 1.02375 1.20512 0.91641 0.90319 0.79529 1.21332 1.35190 0.94864 1.07259 0.91124 1.25876 0.94000 1.02653 0.94573 1.70118 1.36395 1.37148 1.08837 0.85441 0.78399 0.79114 0.78290 1.18665 1.19836 1.20903 1.21860 1.01746 0.90152 0.99217 1.21003 1.06702 0.96000 0.94254 1.20693 0.99910 0.90115 1.00963 1.18072 1.04897 0.85253 0.90473 1.84815 1.36645 1.27479 1.82133 1.21248 0.99383 0.96928 0.94601 1.20369 1.07497 0.89631 1.00021 1.20540 0.94780 0.87387 0.93982 1.87300 1.78574 1.14671 1.42297 0.92220 0.92163 0.95289 0.92637 0.89039 0.90728 0.83884 0.73712 0.82279 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.63 71.98 0.62 -5.84 15 2 C 0.22 10.96 0.74 -10.96 -0.01 10.95 15 3 C -0.55 -30.02 8.28 25.60 0.21 -29.81 15 4 H 0.07 3.73 7.66 -2.91 -0.02 3.71 15 5 C 0.03 1.78 5.30 84.65 0.45 2.23 15 6 N -0.89 -51.02 11.22 21.45 0.24 -50.78 15 7 Si 0.96 42.62 29.54 68.60 2.03 44.65 15 8 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 11 C -0.09 -3.95 6.16 30.73 0.19 -3.76 15 12 C -0.18 -7.22 6.26 -19.53 -0.12 -7.34 15 13 C -0.10 -3.23 9.98 22.28 0.22 -3.01 15 14 C 0.06 1.71 6.71 22.51 0.15 1.86 15 15 O -0.50 -11.68 13.51 -93.31 -1.26 -12.94 15 16 C -0.10 -3.11 9.96 22.31 0.22 -2.89 15 17 C -0.16 -5.85 10.06 22.44 0.23 -5.62 15 18 C 0.08 3.64 6.95 22.67 0.16 3.79 15 19 O -0.31 -17.10 10.07 -96.31 -0.97 -18.07 15 20 H 0.06 3.20 6.39 -2.39 -0.02 3.19 15 21 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 22 H 0.03 1.27 8.13 -2.39 -0.02 1.25 15 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 15 24 H 0.09 3.42 7.92 -2.39 -0.02 3.40 15 25 H 0.07 3.19 7.82 -2.38 -0.02 3.17 15 26 H 0.14 3.95 8.06 -2.91 -0.02 3.92 15 27 H 0.41 5.15 9.06 -74.06 -0.67 4.48 15 28 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15 29 H 0.13 4.55 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -65.20 252.30 2.85 -62.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.49 Total: 14.24 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 2.32 Total: -39.45 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.24 Total: -50.78 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -2.23 Total: -31.01 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.20 2.85 -62.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.042 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds