Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46500 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.34054 * 125.02880 * 124.99528 * 10 9 7 12 12 C 1.38227 * 107.90430 * 179.97438 * 11 10 9 13 13 C 1.41175 * 134.78495 * 180.02562 * 12 11 10 14 14 C 1.35825 * 119.51894 * 180.02562 * 13 12 11 15 15 F 1.35105 * 119.16602 * 179.97438 * 14 13 12 16 16 C 1.39863 * 121.67251 * 359.95661 * 14 13 12 17 17 C 1.35614 * 121.79888 * 0.04698 * 16 14 13 18 18 C 1.41155 * 119.63062 * 359.97438 * 17 16 14 19 19 N 1.32098 * 134.63568 * 180.36311 * 18 17 16 20 20 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 22 22 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 23 23 H 1.07998 * 126.04984 * 0.02562 * 11 10 9 24 24 H 1.08004 * 120.24105 * 359.95992 * 13 12 11 25 25 H 1.07994 * 119.10375 * 180.02562 * 16 14 13 26 26 H 1.07998 * 120.18837 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2027 -3.6127 0.0131 11 6 2.2201 -4.6043 0.9150 12 6 3.2570 -5.4579 0.5883 13 6 3.7735 -6.6513 1.1379 14 6 4.8387 -7.2535 0.5484 15 9 5.3275 -8.3950 1.0807 16 6 5.4421 -6.7221 -0.5960 17 6 4.9957 -5.5795 -1.1742 18 6 3.8924 -4.8993 -0.6151 19 7 3.2253 -3.8018 -0.9237 20 1 -0.4851 -0.8400 -0.0004 21 1 0.6205 -2.5547 0.8933 22 1 0.6280 -2.5591 -0.8867 23 1 1.5431 -4.7168 1.7489 24 1 3.3256 -7.0817 2.0214 25 1 6.2868 -7.2355 -1.0310 26 1 5.4811 -5.1925 -2.0579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107008.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = 21.091566 kcal Electronic energy + Delta-G solvation = -13750.583382 eV Core-core repulsion = 11130.288473 eV Total energy + Delta-G solvation = -2620.294910 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.71526 -42.21244 -38.12727 -35.80101 -33.24911 -32.59935 -29.68774 -28.69371 -25.88559 -23.72195 -22.93298 -21.69064 -19.50699 -18.62327 -18.02989 -17.33546 -16.63722 -16.33795 -15.99725 -15.64150 -15.07093 -14.90653 -14.40472 -14.08067 -13.94693 -13.76174 -13.31893 -12.67116 -12.35348 -12.30612 -11.98836 -11.33315 -11.30420 -11.04946 -10.74062 -9.64457 -8.87932 -8.57669 -6.63123 -0.38210 0.67748 1.39910 1.50589 1.54060 1.56161 1.77233 2.44269 2.70697 2.94721 3.12154 3.48610 3.69377 4.05091 4.13591 4.28609 4.40758 4.50278 4.53161 4.73437 5.07924 5.19353 5.26157 5.42237 5.55487 5.72966 5.95677 6.09864 6.32179 6.72104 7.11341 8.53340 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.058915 B = 0.006157 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.144727 B = 4546.538667 C = 4766.927249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 1.121 2.879 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.626 4.626 8 H 0.045 0.955 9 C 0.244 3.756 10 N -0.293 5.293 11 C 0.077 3.923 12 C -0.218 4.218 13 C -0.068 4.068 14 C 0.039 3.961 15 F -0.147 7.147 16 C -0.100 4.100 17 C -0.084 4.084 18 C 0.056 3.944 19 N -0.340 5.340 20 H 0.263 0.737 21 H 0.065 0.935 22 H 0.027 0.973 23 H 0.220 0.780 24 H 0.159 0.841 25 H 0.168 0.832 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -11.941 2.401 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.214 4.214 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.663 4.663 8 H 0.064 0.936 9 C 0.125 3.875 10 N -0.064 5.064 11 C -0.081 4.081 12 C -0.229 4.229 13 C -0.089 4.089 14 C 0.019 3.981 15 F -0.126 7.126 16 C -0.123 4.123 17 C -0.105 4.105 18 C -0.097 4.097 19 N -0.168 5.168 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.236 0.764 24 H 0.176 0.824 25 H 0.185 0.815 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.503 -9.181 1.553 11.358 hybrid contribution -0.066 -2.343 0.504 2.397 sum 6.437 -11.524 2.057 13.359 Atomic orbital electron populations 1.70922 1.07386 1.30374 1.46885 1.27232 0.96401 1.05949 0.91865 0.82847 0.73965 0.71075 0.77898 1.19936 1.19698 1.20300 1.22242 0.94700 0.91881 1.57519 0.93641 1.19734 0.86615 0.82660 0.98471 1.49098 1.21779 1.18058 1.17507 1.23354 0.99866 0.88487 0.96411 1.19442 1.01530 1.00792 1.01087 1.20263 0.95366 0.92953 1.00315 1.16994 0.97904 0.86188 0.97058 1.91460 1.87469 1.47741 1.85922 1.20814 1.01038 0.95832 0.94606 1.19968 0.94245 0.94967 1.01301 1.21650 0.97958 0.93581 0.96526 1.77746 1.03968 1.19729 1.15400 0.92722 0.91694 0.95482 0.76381 0.82388 0.81452 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 13.65 21.45 0.29 -51.85 15 2 C -0.01 -0.76 5.46 84.66 0.46 -0.30 15 3 Si 1.12 48.79 29.90 68.60 2.05 50.84 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 7 C -0.63 -34.61 9.21 25.60 0.24 -34.38 15 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 15 9 C 0.24 11.91 5.51 85.63 0.47 12.38 15 10 N -0.29 -13.06 3.62 -350.04 -1.27 -14.32 15 11 C 0.08 2.70 11.45 84.35 0.97 3.66 15 12 C -0.22 -7.50 6.33 -20.23 -0.13 -7.63 15 13 C -0.07 -1.87 10.04 22.43 0.23 -1.64 15 14 C 0.04 1.04 7.21 22.10 0.16 1.20 15 15 F -0.15 -3.72 17.23 44.97 0.77 -2.94 15 16 C -0.10 -2.50 9.86 22.06 0.22 -2.29 15 17 C -0.08 -2.54 10.08 22.38 0.23 -2.31 15 18 C 0.06 2.17 7.49 42.15 0.32 2.49 15 19 N -0.34 -15.92 12.35 -48.70 -0.60 -16.52 15 20 H 0.26 14.61 7.22 -92.71 -0.67 13.94 15 21 H 0.07 2.95 7.90 -2.39 -0.02 2.93 15 22 H 0.03 1.40 8.01 -2.39 -0.02 1.38 15 23 H 0.22 5.53 8.06 -2.91 -0.02 5.50 15 24 H 0.16 3.35 8.06 -2.91 -0.02 3.32 15 25 H 0.17 2.94 8.06 -2.91 -0.02 2.92 15 26 H 0.15 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -65.10 243.88 5.70 -59.40 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.30 Total: 4.22 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.15 Total: -28.81 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.57 Total: -82.70 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.77 Total: -2.94 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Total: -65.10 5.70 -59.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107008.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.491 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds