Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34049 * 125.02957 * 125.00222 * 10 9 7 12 12 C 1.38212 * 107.90149 * 179.97438 * 11 10 9 13 13 C 1.41202 * 134.79050 * 180.02562 * 12 11 10 14 14 C 1.35631 * 119.57629 * 179.97438 * 13 12 11 15 15 C 1.39674 * 121.75141 * 359.97438 * 14 13 12 16 16 C 1.35842 * 121.78591 * 0.02562 * 15 14 13 17 17 F 1.35096 * 120.21805 * 180.02562 * 16 15 14 18 18 C 1.41331 * 119.56105 * 359.97438 * 16 15 14 19 19 N 1.32060 * 134.67228 * 180.33820 * 18 16 15 20 20 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 22 22 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 23 23 H 1.07996 * 126.04640 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.20864 * 0.02562 * 13 12 11 25 25 H 1.08005 * 119.12584 * 180.02562 * 14 13 12 26 26 H 1.07993 * 119.11043 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.2249 -4.6065 0.8997 12 6 3.2604 -5.4590 0.5659 13 6 3.7798 -6.6540 1.1099 14 6 4.8403 -7.2549 0.5150 15 6 5.4393 -6.7237 -0.6295 16 6 4.9912 -5.5779 -1.2055 17 9 5.5942 -5.0926 -2.3127 18 6 3.8894 -4.8976 -0.6393 19 7 3.2212 -3.7993 -0.9417 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6243 -2.5567 0.8903 23 1 1.5522 -4.7210 1.7367 24 1 3.3350 -7.0871 1.9937 25 1 5.2314 -8.1689 0.9370 26 1 6.2820 -7.2374 -1.0680 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118593.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = 41.064208 kcal Electronic energy + Delta-G solvation = -13868.473748 eV Core-core repulsion = 11249.044917 eV Total energy + Delta-G solvation = -2619.428831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.38104 -40.66451 -36.79281 -33.57912 -31.68965 -30.81927 -28.24773 -27.48855 -24.24264 -21.82079 -21.66077 -20.14825 -17.34514 -16.66675 -16.59689 -15.82205 -15.28440 -14.98671 -14.70355 -14.26096 -14.04540 -12.80798 -12.64040 -12.45625 -12.16997 -11.73215 -11.31714 -11.19828 -10.98364 -10.83195 -10.38438 -10.01563 -9.82566 -9.52675 -8.76388 -8.13263 -7.12953 -6.38228 -4.44516 1.00551 2.09151 2.88481 3.15508 3.18632 3.24723 3.31397 4.07123 4.21556 4.56805 4.64723 4.99109 5.08607 5.35736 5.59017 5.68326 5.75564 5.86026 6.43041 6.46862 6.61763 6.73037 6.80347 6.90532 7.26227 7.46548 7.66868 7.68051 8.25795 8.62803 9.22425 10.70954 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.042089 B = 0.007244 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.092898 B = 3864.413585 C = 4279.542669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.912 3.088 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.242 3.758 10 N -0.264 5.264 11 C 0.067 3.933 12 C -0.206 4.206 13 C -0.041 4.041 14 C -0.157 4.157 15 C -0.129 4.129 16 C 0.116 3.884 17 F -0.140 7.140 18 C 0.047 3.953 19 N -0.274 5.274 20 H 0.270 0.730 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.183 0.817 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -11.398 3.096 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.126 3.874 10 N -0.037 5.037 11 C -0.092 4.092 12 C -0.216 4.216 13 C -0.062 4.062 14 C -0.177 4.177 15 C -0.152 4.152 16 C 0.093 3.907 17 F -0.119 7.119 18 C -0.106 4.106 19 N -0.103 5.103 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.200 0.800 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.563 -10.053 2.184 11.254 hybrid contribution 0.445 0.416 0.362 0.709 sum 5.008 -9.637 2.546 11.155 Atomic orbital electron populations 1.69902 1.06082 1.28000 1.49050 1.24932 0.95031 0.99690 0.94141 0.86257 0.79639 0.81669 0.78604 1.20122 1.20827 1.19566 1.21168 0.94083 0.88896 1.53169 0.91027 1.20114 0.85789 0.81307 1.00225 1.49695 1.21092 1.17437 1.15426 1.22729 0.99655 0.90000 0.96841 1.19377 1.01246 1.00664 1.00314 1.20200 0.95237 0.92477 0.98242 1.20078 0.98742 1.01555 0.97302 1.20398 1.01701 0.95177 0.97957 1.16292 0.93179 0.94807 0.86378 1.91461 1.82066 1.87935 1.50405 1.20871 0.97455 0.95303 0.97008 1.77924 1.02317 1.16811 1.13241 0.92067 0.92533 0.91835 0.79993 0.85991 0.85984 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.78 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.54 -14.53 9.21 -34.44 -0.32 -14.85 15 8 H 0.07 2.04 7.81 -52.48 -0.41 1.63 15 9 C 0.24 5.87 6.20 -5.19 -0.03 5.84 15 10 N -0.26 -5.89 3.62 -61.99 -0.22 -6.12 15 11 C 0.07 1.21 11.45 -16.59 -0.19 1.02 15 12 C -0.21 -3.68 6.33 -105.19 -0.67 -4.34 15 13 C -0.04 -0.57 10.09 -39.39 -0.40 -0.97 15 14 C -0.16 -2.04 9.90 -39.98 -0.40 -2.43 15 15 C -0.13 -1.89 9.87 -39.90 -0.39 -2.28 15 16 C 0.12 2.15 7.33 -39.26 -0.29 1.86 15 17 F -0.14 -2.70 17.27 2.25 0.04 -2.66 15 18 C 0.05 0.99 7.48 -83.01 -0.62 0.37 15 19 N -0.27 -6.58 12.35 33.28 0.41 -6.17 15 20 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 21 H 0.06 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.06 1.46 8.04 -51.93 -0.42 1.04 15 23 H 0.18 2.45 8.06 -52.49 -0.42 2.03 15 24 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 25 H 0.12 1.17 8.06 -52.48 -0.42 0.75 15 26 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -29.98 245.23 -5.84 -35.82 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -2.08 Total: -2.71 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.40 Total: -14.13 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.92 Total: -36.07 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.98 -5.84 -35.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118593.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.887 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds