Wall clock time and date at job start Mon Mar 30 2020 02:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38092 * 126.07903 * 2 1 4 4 C 1.41280 * 134.70252 * 0.25300 * 3 2 1 5 5 C 1.35695 * 119.55588 * 179.97438 * 4 3 2 6 6 C 1.39636 * 121.72099 * 359.97438 * 5 4 3 7 7 C 1.36009 * 121.80017 * 0.02562 * 6 5 4 8 8 F 1.35099 * 120.20397 * 179.97438 * 7 6 5 9 9 C 1.41097 * 119.59477 * 359.97438 * 7 6 5 10 10 N 1.32342 * 134.55073 * 180.02562 * 9 7 6 11 11 N 1.35094 * 126.07981 * 180.30293 * 2 1 3 12 12 C 1.37121 * 125.10910 * 359.76203 * 11 2 1 13 13 H 1.07995 * 120.00448 * 0.02562 * 12 11 2 14 14 C 1.39138 * 119.99424 * 179.97438 * 12 11 2 15 15 N 1.31170 * 120.00342 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99772 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46974 * 60.00562 * 16 14 12 18 18 H 1.48499 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47622 * 300.00721 * 16 14 12 20 20 H 1.08998 * 109.47792 * 269.71971 * 1 2 3 21 21 H 1.09002 * 109.46659 * 29.71810 * 1 2 3 22 22 H 1.09001 * 109.47074 * 149.71232 * 1 2 3 23 23 H 1.07996 * 120.22003 * 359.96724 * 4 3 2 24 24 H 1.07997 * 119.13977 * 179.97438 * 5 4 3 25 25 H 1.07994 * 119.10238 * 179.97438 * 6 5 4 26 26 H 0.96995 * 120.00651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3203 1.1161 0.0000 4 6 2.0940 2.5106 0.0044 5 6 3.1519 3.3604 0.0034 6 6 4.4681 2.8942 -0.0014 7 6 4.7577 1.5653 -0.0059 8 9 6.0432 1.1499 -0.0110 9 6 3.7074 0.6232 -0.0051 10 7 3.6459 -0.6988 -0.0080 11 7 2.3026 -1.0918 -0.0058 12 6 1.8605 -2.3898 -0.0080 13 1 0.8011 -2.5994 -0.0054 14 6 2.7769 -3.4367 -0.0146 15 7 4.0636 -3.1821 -0.0182 16 14 2.1747 -5.2050 -0.0168 17 1 1.3476 -5.4446 -1.2267 18 1 3.3404 -6.1249 -0.0247 19 1 1.3573 -5.4512 1.1982 20 1 -0.3634 -0.0050 1.0276 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3633 -0.8874 -0.5183 23 1 1.0857 2.8977 0.0085 24 1 2.9711 4.4251 0.0064 25 1 5.2782 3.6083 -0.0025 26 1 4.7025 -3.9120 -0.0224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120196.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:24 Heat of formation + Delta-G solvation = 35.671048 kcal Electronic energy + Delta-G solvation = -14322.886767 eV Core-core repulsion = 11703.224071 eV Total energy + Delta-G solvation = -2619.662696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.70127 -39.86664 -36.19340 -33.60498 -31.73468 -30.12113 -28.70533 -26.03395 -25.42268 -22.33923 -20.89915 -19.07695 -17.71536 -16.50626 -15.64147 -14.93921 -14.82606 -14.66489 -14.10237 -13.99337 -13.80698 -12.33714 -12.24029 -12.06946 -11.95122 -11.70766 -11.49252 -11.10831 -10.88655 -10.78017 -10.73093 -10.38523 -9.52025 -8.82660 -8.74990 -7.91024 -6.99814 -6.27996 -4.70990 1.80767 2.74246 2.83556 2.86761 2.90034 3.52863 3.62310 4.29240 4.66560 4.85137 5.33053 5.50647 5.72672 5.93785 6.02964 6.25485 6.28683 6.37668 6.55983 6.57248 6.66955 6.79734 7.22881 7.23545 7.49070 7.57084 7.70314 7.92833 8.30195 8.92195 9.29570 9.90764 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.036537 B = 0.010112 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.152420 B = 2768.275441 C = 3519.284045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.083 4.083 3 C -0.164 4.164 4 C -0.069 4.069 5 C -0.171 4.171 6 C -0.158 4.158 7 C 0.100 3.900 8 F -0.152 7.152 9 C 0.013 3.987 10 N -0.285 5.285 11 N -0.076 5.076 12 C -0.292 4.292 13 H 0.131 0.869 14 C 0.042 3.958 15 N -0.727 5.727 16 Si 0.945 3.055 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.260 1.260 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 2.256 -0.008 5.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.215 4.215 3 C -0.174 4.174 4 C -0.090 4.090 5 C -0.192 4.192 6 C -0.181 4.181 7 C 0.076 3.924 8 F -0.131 7.131 9 C -0.130 4.130 10 N -0.119 5.119 11 N 0.165 4.835 12 C -0.430 4.430 13 H 0.148 0.852 14 C -0.181 4.181 15 N -0.350 5.350 16 Si 0.767 3.233 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.185 1.185 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.132 0.868 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.958 1.045 -0.015 4.093 hybrid contribution -0.295 -0.108 0.003 0.314 sum -4.253 0.937 -0.012 4.355 Atomic orbital electron populations 1.19922 0.88625 1.01696 1.01045 1.20451 0.93350 0.86352 1.21383 1.18823 0.91253 0.93009 1.14288 1.19970 0.97596 0.90688 1.00704 1.19775 0.91436 0.98143 1.09822 1.20071 0.97534 0.92511 1.07940 1.16181 0.75927 0.90893 1.09401 1.91382 1.35840 1.91358 1.94505 1.21014 0.93213 0.93230 1.05522 1.78960 0.91914 1.07453 1.33585 1.44903 1.04076 1.04928 1.29570 1.20423 0.95131 0.78324 1.49077 0.85187 1.25967 0.94808 1.02313 0.95035 1.70184 1.01385 1.34946 1.28464 0.85706 0.79224 0.78279 0.80132 1.18474 1.19559 1.18457 0.92562 0.91827 0.92226 0.87597 0.87443 0.86814 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.00 36.01 0.36 -0.62 15 2 C -0.08 -1.98 6.96 -81.21 -0.57 -2.54 15 3 C -0.16 -3.99 6.26 -105.15 -0.66 -4.65 15 4 C -0.07 -1.41 10.09 -39.34 -0.40 -1.80 15 5 C -0.17 -3.29 9.90 -39.97 -0.40 -3.69 15 6 C -0.16 -3.30 9.87 -39.86 -0.39 -3.69 15 7 C 0.10 2.47 7.32 -39.30 -0.29 2.18 15 8 F -0.15 -3.80 17.27 2.25 0.04 -3.76 15 9 C 0.01 0.37 7.48 -82.92 -0.62 -0.25 15 10 N -0.28 -8.35 10.30 33.30 0.34 -8.01 15 11 N -0.08 -2.05 3.67 -7.47 -0.03 -2.07 15 12 C -0.29 -7.20 9.88 -14.85 -0.15 -7.35 15 13 H 0.13 2.77 6.91 -52.49 -0.36 2.40 15 14 C 0.04 1.00 5.50 -17.50 -0.10 0.91 15 15 N -0.73 -19.15 11.73 55.50 0.65 -18.50 15 16 Si 0.94 17.12 29.55 -169.99 -5.02 12.10 15 17 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 19 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.00 7.24 -51.93 -0.38 0.62 15 23 H 0.11 1.81 8.06 -52.49 -0.42 1.39 15 24 H 0.11 1.68 8.06 -52.49 -0.42 1.25 15 25 H 0.11 2.01 8.06 -52.49 -0.42 1.59 15 26 H 0.29 6.81 8.30 -40.82 -0.34 6.47 15 LS Contribution 240.01 15.07 3.62 3.62 Total: -1.00 -30.52 240.01 -5.59 -36.11 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -1.99 Total: 2.03 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.20 Total: -21.51 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.97 Total: -28.59 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.02 Total: 12.10 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.52 -5.59 -36.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120196.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.778 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds