Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31818 * 118.68486 * 2 1 4 4 C 1.32603 * 120.71047 * 179.97438 * 3 2 1 5 5 N 1.37158 * 134.68097 * 180.02562 * 4 3 2 6 6 H 0.96991 * 126.48171 * 0.02562 * 5 4 3 7 7 C 1.38080 * 107.04128 * 179.97438 * 5 4 3 8 8 C 1.40055 * 125.34758 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00361 * 6.30061 * 8 7 5 10 10 C 1.40336 * 120.00141 * 186.29100 * 8 7 5 11 11 N 1.30601 * 119.99999 * 6.84496 * 10 8 7 12 12 Si 1.86798 * 120.00137 * 186.57539 * 10 8 7 13 13 H 1.48499 * 109.47642 * 84.98769 * 12 10 8 14 14 H 1.48500 * 109.47015 * 204.99329 * 12 10 8 15 15 H 1.48509 * 109.46962 * 324.98910 * 12 10 8 16 16 N 1.32587 * 109.30201 * 0.26925 * 7 5 4 17 17 C 1.33522 * 109.60709 * 359.55946 * 16 7 5 18 18 C 1.41241 * 134.33412 * 180.15288 * 17 16 7 19 19 O 1.35333 * 120.80455 * 0.27529 * 18 17 16 20 20 N 1.32080 * 118.67647 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47150 * 269.97002 * 1 2 3 22 22 H 1.09000 * 109.47195 * 29.96131 * 1 2 3 23 23 H 1.08992 * 109.47745 * 149.96857 * 1 2 3 24 24 H 0.97000 * 120.00032 * 179.71956 * 11 10 8 25 25 H 0.96700 * 113.99684 * 90.00571 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1564 0.0000 4 6 3.4649 1.2033 0.0005 5 7 4.3942 2.2120 0.0011 6 1 4.2114 3.1645 0.0016 7 6 5.6393 1.6151 0.0020 8 6 6.8638 2.2949 0.0023 9 1 6.8847 3.3699 0.1045 10 6 8.0638 1.5793 -0.1299 11 7 8.0357 0.2991 -0.3868 12 14 9.7012 2.4592 0.0541 13 1 10.0669 2.5291 1.4916 14 1 10.7497 1.7140 -0.6879 15 1 9.5887 3.8343 -0.4955 16 7 5.4936 0.2972 -0.0039 17 6 4.1941 -0.0098 0.0010 18 6 3.4659 -1.2200 0.0012 19 8 4.1045 -2.4132 0.0011 20 7 2.1408 -1.1588 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3634 -0.8896 -0.5143 24 1 8.8651 -0.1948 -0.4822 25 1 4.2902 -2.7599 0.8845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161776.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 40.039233 kcal Electronic energy + Delta-G solvation = -14271.302268 eV Core-core repulsion = 11671.748952 eV Total energy + Delta-G solvation = -2599.553316 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01632 -38.25030 -36.52894 -33.92352 -32.06515 -31.04834 -30.38053 -28.09924 -25.32801 -22.67827 -21.44108 -20.53047 -18.54358 -17.79705 -16.65033 -16.21495 -15.36021 -14.82314 -14.47053 -13.67954 -13.38106 -13.16778 -12.81055 -11.99113 -11.78316 -11.58281 -11.39064 -11.17924 -11.06753 -10.59565 -10.15816 -10.07618 -9.51600 -8.92874 -8.44846 -7.89066 -7.37058 -6.95457 -4.91104 1.70195 2.26966 2.86565 2.90282 2.94679 3.57268 3.84715 3.91476 4.35219 4.71866 5.06922 5.13556 5.56059 5.63305 5.88796 6.05489 6.18401 6.32923 6.66186 6.88124 6.98342 7.23616 7.56008 7.71267 8.02231 8.31265 8.36610 8.72731 9.16712 9.51219 9.93181 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.052838 B = 0.008267 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.796636 B = 3386.052277 C = 3890.412048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.252 3.748 3 N -0.514 5.514 4 C 0.234 3.766 5 N -0.629 5.629 6 H 0.412 0.588 7 C 0.416 3.584 8 C -0.422 4.422 9 H 0.096 0.904 10 C 0.073 3.927 11 N -0.704 5.704 12 Si 0.927 3.073 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.260 1.260 16 N -0.509 5.509 17 C 0.020 3.980 18 C 0.315 3.685 19 O -0.466 6.466 20 N -0.528 5.528 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.286 0.714 25 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 2.042 2.036 3.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.017 4.017 3 N -0.236 5.236 4 C -0.016 4.016 5 N -0.249 5.249 6 H 0.249 0.751 7 C 0.180 3.820 8 C -0.459 4.459 9 H 0.114 0.886 10 C -0.157 4.157 11 N -0.324 5.324 12 Si 0.750 3.250 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.184 1.184 16 N -0.234 5.234 17 C -0.117 4.117 18 C 0.122 3.878 19 O -0.270 6.270 20 N -0.255 5.255 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.705 1.244 1.361 3.273 hybrid contribution 0.967 1.301 0.553 1.713 sum -1.738 2.545 1.914 3.628 Atomic orbital electron populations 1.20177 0.86751 1.02559 1.02232 1.21886 0.96226 0.81334 1.02206 1.66662 1.06963 1.31234 1.18779 1.19039 0.88302 0.89657 1.04583 1.43047 1.05375 1.07259 1.69267 0.75107 1.20545 0.83458 0.87059 0.90889 1.18620 0.87116 0.95162 1.45028 0.88577 1.25955 1.01320 0.94952 0.93440 1.69931 1.30339 1.07565 1.24585 0.86010 0.79281 0.80077 0.79621 1.18895 1.19712 1.18355 1.71322 1.11372 1.09772 1.30975 1.21012 0.94115 0.93405 1.03158 1.18358 0.85394 0.83170 1.00913 1.84688 1.76098 1.33632 1.32615 1.67346 1.09149 1.30958 1.18076 0.91391 0.91017 0.90801 0.90222 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.29 36.00 0.37 -0.54 15 2 C 0.25 5.40 7.64 -156.93 -1.20 4.20 15 3 N -0.51 -11.82 10.34 -9.82 -0.10 -11.92 15 4 C 0.23 5.76 8.51 -155.69 -1.32 4.44 15 5 N -0.63 -14.44 6.30 -11.36 -0.07 -14.51 15 6 H 0.41 7.88 8.96 -40.82 -0.37 7.51 15 7 C 0.42 10.65 7.54 -155.41 -1.17 9.48 15 8 C -0.42 -10.02 9.46 -38.11 -0.36 -10.38 15 9 H 0.10 2.01 7.86 -52.49 -0.41 1.60 15 10 C 0.07 1.67 5.49 -17.29 -0.09 1.58 15 11 N -0.70 -17.59 11.92 55.57 0.66 -16.92 15 12 Si 0.93 16.60 29.57 -169.99 -5.03 11.57 15 13 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 14 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 15 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 16 N -0.51 -14.11 9.41 -10.12 -0.10 -14.21 15 17 C 0.02 0.53 7.24 -84.73 -0.61 -0.08 15 18 C 0.32 7.68 7.92 -16.06 -0.13 7.55 15 19 O -0.47 -10.30 13.58 -17.69 -0.24 -10.54 15 20 N -0.53 -12.05 10.31 -10.31 -0.11 -12.16 15 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.29 6.41 8.29 -40.82 -0.34 6.07 15 25 H 0.39 6.50 9.06 45.56 0.41 6.91 15 LS Contribution 235.44 15.07 3.55 3.55 Total: -1.00 -31.15 235.44 -6.72 -37.87 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.77 Total: 11.03 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: -4.52 Total: 16.24 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: 0.29 Total: -69.72 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.24 Total: -10.54 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.15 -6.72 -37.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161776.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.908 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds