Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38101 * 126.08195 * 2 1 4 4 C 1.41239 * 134.69304 * 359.97438 * 3 2 1 5 5 C 1.35896 * 119.49721 * 180.31234 * 4 3 2 6 6 F 1.35092 * 119.17552 * 179.97438 * 5 4 3 7 7 C 1.39814 * 121.64608 * 0.02562 * 5 4 3 8 8 C 1.35804 * 121.80596 * 359.97438 * 7 5 4 9 9 C 1.40911 * 119.66805 * 0.02562 * 8 7 5 10 10 N 1.32371 * 134.51687 * 179.97438 * 9 8 7 11 11 N 1.35091 * 126.07718 * 179.86330 * 2 1 3 12 12 C 1.37098 * 125.10771 * 359.97438 * 11 2 1 13 13 H 1.07994 * 120.00161 * 5.92194 * 12 11 2 14 14 C 1.39141 * 119.99832 * 185.92930 * 12 11 2 15 15 N 1.31173 * 119.99837 * 176.37323 * 14 12 11 16 16 Si 1.86797 * 120.00020 * 356.09634 * 14 12 11 17 17 H 1.48510 * 109.47278 * 180.28044 * 16 14 12 18 18 H 1.48502 * 109.47315 * 300.27327 * 16 14 12 19 19 H 1.48502 * 109.47415 * 60.27710 * 16 14 12 20 20 H 1.08999 * 109.47054 * 270.16080 * 1 2 3 21 21 H 1.09007 * 109.46656 * 30.15403 * 1 2 3 22 22 H 1.08999 * 109.47235 * 150.15446 * 1 2 3 23 23 H 1.07998 * 120.25049 * 0.28370 * 4 3 2 24 24 H 1.07995 * 119.09684 * 180.02562 * 7 5 4 25 25 H 1.07997 * 120.16499 * 180.02562 * 8 7 5 26 26 H 0.96995 * 120.00221 * 355.25093 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3204 1.1161 0.0000 4 6 2.0940 2.5102 -0.0004 5 6 3.1542 3.3603 -0.0067 6 9 2.9302 4.6925 -0.0077 7 6 4.4711 2.8906 -0.0133 8 6 4.7575 1.5631 -0.0133 9 6 3.7077 0.6231 -0.0070 10 7 3.6459 -0.6992 -0.0056 11 7 2.3026 -1.0918 0.0026 12 6 1.8604 -2.3895 0.0062 13 1 0.8057 -2.6009 -0.0893 14 6 2.7706 -3.4343 0.1331 15 7 2.3423 -4.6718 0.2081 16 14 4.6029 -3.0751 0.1889 17 1 5.3535 -4.3498 0.3202 18 1 5.0109 -2.3873 -1.0624 19 1 4.9012 -2.2028 1.3531 20 1 -0.3633 0.0029 1.0276 21 1 -0.3633 0.8887 -0.5163 22 1 -0.3634 -0.8914 -0.5114 23 1 1.0859 2.8977 0.0037 24 1 5.2827 3.6029 -0.0178 25 1 5.7846 1.2295 -0.0181 26 1 1.3903 -4.8542 0.2446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175170.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = 23.523398 kcal Electronic energy + Delta-G solvation = -14283.938178 eV Core-core repulsion = 11663.748721 eV Total energy + Delta-G solvation = -2620.189458 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.08920 -40.34747 -36.42673 -33.85293 -32.15832 -30.57967 -29.31472 -25.89896 -25.57283 -22.34703 -21.18187 -19.35367 -18.48527 -16.98699 -16.18422 -15.46449 -14.92048 -14.56099 -14.37356 -13.75920 -13.69030 -13.10780 -12.79283 -12.34343 -12.29557 -11.93780 -11.58953 -11.40072 -11.10970 -10.55340 -10.30336 -10.11991 -9.68055 -9.08329 -8.60220 -8.18258 -7.80733 -6.70474 -4.97132 1.47097 2.39261 3.04888 3.32748 3.57959 3.60275 3.88368 4.12236 4.53876 4.54846 5.02781 5.21667 5.45528 5.69348 5.74319 6.03138 6.08794 6.20595 6.31684 6.34435 6.47165 6.79736 6.95128 6.98369 7.07080 7.27221 7.49980 7.65783 7.95614 8.49330 8.80812 9.60244 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.010087 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.716327 B = 2775.274045 C = 3427.117141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.060 4.060 3 C -0.157 4.157 4 C -0.092 4.092 5 C 0.023 3.977 6 F -0.162 7.162 7 C -0.139 4.139 8 C -0.091 4.091 9 C 0.073 3.927 10 N -0.396 5.396 11 N -0.082 5.082 12 C -0.340 4.340 13 H 0.127 0.873 14 C 0.041 3.959 15 N -0.788 5.788 16 Si 1.125 2.875 17 H -0.311 1.311 18 H -0.274 1.274 19 H -0.274 1.274 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 6.632 -0.118 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.195 4.195 3 C -0.167 4.167 4 C -0.113 4.113 5 C 0.001 3.999 6 F -0.142 7.142 7 C -0.161 4.161 8 C -0.113 4.113 9 C -0.065 4.065 10 N -0.234 5.234 11 N 0.162 4.838 12 C -0.478 4.478 13 H 0.145 0.855 14 C -0.180 4.180 15 N -0.412 5.412 16 Si 0.955 3.045 17 H -0.241 1.241 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.135 0.865 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.191 4.797 -0.060 4.943 hybrid contribution -2.310 1.499 -0.101 2.756 sum -1.119 6.296 -0.161 6.397 Atomic orbital electron populations 1.19983 0.88202 1.01990 1.01480 1.20373 0.93461 0.85856 1.19819 1.18652 0.92372 0.92112 1.13538 1.19846 0.97322 0.90994 1.03172 1.16704 0.93826 0.76379 1.12950 1.91369 1.95669 1.31865 1.95263 1.20176 0.94539 0.95610 1.05786 1.19423 0.96558 0.90225 1.05123 1.20606 0.93767 0.90870 1.01261 1.76512 0.93466 1.11303 1.42166 1.44934 1.03782 1.05614 1.29466 1.21739 0.97580 0.79091 1.49354 0.85516 1.27394 1.09844 0.90533 0.90192 1.70859 1.19901 1.19110 1.31326 0.82439 0.69485 0.72116 0.80474 1.24127 1.20079 1.20087 0.92115 0.91455 0.92074 0.86451 0.86186 0.86096 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.03 36.01 0.36 -0.65 15 2 C -0.06 -1.35 6.96 -81.20 -0.57 -1.91 15 3 C -0.16 -3.54 6.25 -105.15 -0.66 -4.19 15 4 C -0.09 -1.81 10.04 -39.28 -0.39 -2.21 15 5 C 0.02 0.44 7.21 -39.83 -0.29 0.15 15 6 F -0.16 -2.97 17.23 2.25 0.04 -2.93 15 7 C -0.14 -2.56 9.86 -39.86 -0.39 -2.95 15 8 C -0.09 -1.83 10.08 -39.44 -0.40 -2.23 15 9 C 0.07 1.75 7.48 -82.97 -0.62 1.13 15 10 N -0.40 -10.18 7.00 33.28 0.23 -9.94 15 11 N -0.08 -2.06 3.63 -7.47 -0.03 -2.09 15 12 C -0.34 -8.38 10.24 -14.86 -0.15 -8.54 15 13 H 0.13 2.94 7.08 -52.49 -0.37 2.57 15 14 C 0.04 1.02 5.50 -17.50 -0.10 0.93 15 15 N -0.79 -19.53 13.68 55.50 0.76 -18.77 15 16 Si 1.13 26.56 25.61 -169.99 -4.35 22.20 15 17 H -0.31 -7.09 7.11 56.52 0.40 -6.69 15 18 H -0.27 -6.61 6.99 56.52 0.40 -6.21 15 19 H -0.27 -6.63 6.93 56.52 0.39 -6.24 15 20 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 1.03 7.18 -51.93 -0.37 0.66 15 23 H 0.12 2.02 8.06 -52.49 -0.42 1.60 15 24 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 25 H 0.12 2.16 8.06 -52.49 -0.42 1.74 15 26 H 0.29 6.66 8.72 -40.82 -0.36 6.31 15 LS Contribution 235.28 15.07 3.55 3.55 Total: -1.00 -27.14 235.28 -5.03 -32.17 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -2.03 Total: -3.71 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.20 Total: -20.48 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.96 Total: -30.80 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -4.35 Total: 22.20 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.14 -5.03 -32.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175170.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.694 kcal (2) G-P(sol) polarization free energy of solvation -27.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds