Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38101 * 126.08195 * 2 1 4 4 C 1.41239 * 134.69304 * 359.97438 * 3 2 1 5 5 C 1.35896 * 119.49721 * 180.31234 * 4 3 2 6 6 F 1.35092 * 119.17552 * 179.97438 * 5 4 3 7 7 C 1.39814 * 121.64608 * 0.02562 * 5 4 3 8 8 C 1.35804 * 121.80596 * 359.97438 * 7 5 4 9 9 C 1.40911 * 119.66805 * 0.02562 * 8 7 5 10 10 N 1.32371 * 134.51687 * 179.97438 * 9 8 7 11 11 N 1.35091 * 126.07718 * 179.86330 * 2 1 3 12 12 C 1.37098 * 125.10771 * 359.97438 * 11 2 1 13 13 H 1.07994 * 120.00161 * 5.92194 * 12 11 2 14 14 C 1.39141 * 119.99832 * 185.92930 * 12 11 2 15 15 N 1.31173 * 119.99837 * 176.37323 * 14 12 11 16 16 Si 1.86797 * 120.00020 * 356.09634 * 14 12 11 17 17 H 1.48510 * 109.47278 * 180.28044 * 16 14 12 18 18 H 1.48502 * 109.47315 * 300.27327 * 16 14 12 19 19 H 1.48502 * 109.47415 * 60.27710 * 16 14 12 20 20 H 1.08999 * 109.47054 * 270.16080 * 1 2 3 21 21 H 1.09007 * 109.46656 * 30.15403 * 1 2 3 22 22 H 1.08999 * 109.47235 * 150.15446 * 1 2 3 23 23 H 1.07998 * 120.25049 * 0.28370 * 4 3 2 24 24 H 1.07995 * 119.09684 * 180.02562 * 7 5 4 25 25 H 1.07997 * 120.16499 * 180.02562 * 8 7 5 26 26 H 0.96995 * 120.00221 * 355.25093 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3204 1.1161 0.0000 4 6 2.0940 2.5102 -0.0004 5 6 3.1542 3.3603 -0.0067 6 9 2.9302 4.6925 -0.0077 7 6 4.4711 2.8906 -0.0133 8 6 4.7575 1.5631 -0.0133 9 6 3.7077 0.6231 -0.0070 10 7 3.6459 -0.6992 -0.0056 11 7 2.3026 -1.0918 0.0026 12 6 1.8604 -2.3895 0.0062 13 1 0.8057 -2.6009 -0.0893 14 6 2.7706 -3.4343 0.1331 15 7 2.3423 -4.6718 0.2081 16 14 4.6029 -3.0751 0.1889 17 1 5.3535 -4.3498 0.3202 18 1 5.0109 -2.3873 -1.0624 19 1 4.9012 -2.2028 1.3531 20 1 -0.3633 0.0029 1.0276 21 1 -0.3633 0.8887 -0.5163 22 1 -0.3634 -0.8914 -0.5114 23 1 1.0859 2.8977 0.0037 24 1 5.2827 3.6029 -0.0178 25 1 5.7846 1.2295 -0.0181 26 1 1.3903 -4.8542 0.2446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175170.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = 8.670695 kcal Electronic energy + Delta-G solvation = -14284.582240 eV Core-core repulsion = 11663.748721 eV Total energy + Delta-G solvation = -2620.833519 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.58896 -42.07563 -38.06107 -35.62405 -33.80921 -32.27725 -30.86231 -27.52799 -27.25438 -24.02989 -22.83456 -21.07236 -20.20930 -18.61411 -17.89134 -17.03514 -16.51031 -16.18735 -16.02024 -15.56378 -15.38396 -14.67606 -14.40236 -13.86506 -13.77580 -13.52569 -13.14870 -13.07030 -12.81457 -12.32971 -12.11016 -11.72304 -11.48061 -10.77923 -10.41695 -9.88681 -9.63304 -8.37357 -6.80617 -0.15357 0.78823 1.27271 1.44375 1.74174 1.78503 2.08008 2.28895 2.69189 2.90036 3.39799 3.66848 3.91863 4.21400 4.26014 4.49007 4.68726 4.70940 4.75633 4.87634 4.97256 5.13695 5.31446 5.38775 5.40674 5.62262 5.83607 5.95870 6.28355 6.75588 7.03846 7.80838 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.010087 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.716327 B = 2775.274045 C = 3427.117141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.039 4.039 3 C -0.187 4.187 4 C -0.084 4.084 5 C 0.024 3.976 6 F -0.153 7.153 7 C -0.118 4.118 8 C -0.101 4.101 9 C 0.045 3.955 10 N -0.427 5.427 11 N -0.114 5.114 12 C -0.370 4.370 13 H 0.132 0.868 14 C 0.020 3.980 15 N -0.816 5.816 16 Si 1.154 2.846 17 H -0.304 1.304 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.146 0.854 24 H 0.159 0.841 25 H 0.140 0.860 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 9.446 -0.145 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.177 4.177 3 C -0.196 4.196 4 C -0.105 4.105 5 C 0.003 3.997 6 F -0.132 7.132 7 C -0.140 4.140 8 C -0.124 4.124 9 C -0.095 4.095 10 N -0.266 5.266 11 N 0.129 4.871 12 C -0.505 4.505 13 H 0.150 0.850 14 C -0.197 4.197 15 N -0.442 5.442 16 Si 0.985 3.015 17 H -0.235 1.235 18 H -0.215 1.215 19 H -0.216 1.216 20 H 0.097 0.903 21 H 0.115 0.885 22 H 0.083 0.917 23 H 0.164 0.836 24 H 0.177 0.823 25 H 0.158 0.842 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.919 7.560 -0.086 7.616 hybrid contribution -2.211 1.105 -0.101 2.474 sum -1.293 8.665 -0.187 8.763 Atomic orbital electron populations 1.20197 0.84889 1.03601 1.03092 1.21361 0.95641 0.85316 1.15368 1.18974 0.91869 0.93381 1.15395 1.20121 0.99126 0.89774 1.01478 1.16863 0.94120 0.76781 1.11938 1.91406 1.95636 1.31053 1.95084 1.20591 0.95514 0.95466 1.02452 1.19781 0.96900 0.90457 1.05221 1.21220 0.95686 0.90791 1.01768 1.76313 0.94819 1.12754 1.42702 1.45019 1.03789 1.06118 1.32156 1.21668 0.97729 0.79330 1.51789 0.85047 1.27637 1.10728 0.90903 0.90419 1.70841 1.20155 1.19151 1.34009 0.81995 0.68948 0.71541 0.79005 1.23452 1.21536 1.21647 0.90333 0.88525 0.91740 0.83588 0.82334 0.84248 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.93 10.03 71.24 0.71 -1.21 15 2 C -0.04 -1.72 6.96 42.03 0.29 -1.43 15 3 C -0.19 -7.99 6.25 -20.21 -0.13 -8.12 15 4 C -0.08 -2.98 10.04 22.46 0.23 -2.76 15 5 C 0.02 0.82 7.21 22.11 0.16 0.98 15 6 F -0.15 -4.85 17.23 44.97 0.77 -4.07 15 7 C -0.12 -3.85 9.86 22.09 0.22 -3.63 15 8 C -0.10 -3.84 10.08 22.36 0.23 -3.62 15 9 C 0.04 2.09 7.48 42.08 0.31 2.40 15 10 N -0.43 -22.14 7.00 -48.63 -0.34 -22.48 15 11 N -0.11 -5.74 3.63 -177.56 -0.65 -6.38 15 12 C -0.37 -18.71 10.24 84.09 0.86 -17.85 15 13 H 0.13 6.26 7.08 -2.91 -0.02 6.24 15 14 C 0.02 1.03 5.50 85.01 0.47 1.49 15 15 N -0.82 -41.64 13.68 21.68 0.30 -41.35 15 16 Si 1.15 55.80 25.61 68.60 1.76 57.55 15 17 H -0.30 -14.01 7.11 99.48 0.71 -13.31 15 18 H -0.29 -14.28 6.99 99.48 0.70 -13.58 15 19 H -0.29 -14.38 6.93 99.48 0.69 -13.69 15 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.10 2.54 8.14 -2.38 -0.02 2.52 15 22 H 0.06 2.06 7.18 -2.39 -0.02 2.04 15 23 H 0.15 4.31 8.06 -2.91 -0.02 4.28 15 24 H 0.16 3.94 8.06 -2.91 -0.02 3.92 15 25 H 0.14 4.66 8.06 -2.91 -0.02 4.64 15 26 H 0.29 13.93 8.72 -92.71 -0.81 13.12 15 Total: -1.00 -58.32 235.28 6.33 -51.99 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 1.14 Total: -1.53 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.35 Total: -33.73 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -0.69 Total: -70.21 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.77 Total: -4.07 kcal Atomic # 14 Polarization: 55.80 SS G_CDS: 1.76 Total: 57.55 kcal Total: -58.32 6.33 -51.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175170.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.661 kcal (2) G-P(sol) polarization free energy of solvation -58.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds