Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99845 * 3 2 1 5 5 H 1.48504 * 109.47421 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47434 * 149.99854 * 3 2 1 7 7 C 1.37878 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99991 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99771 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.33987 * 125.01880 * 125.00339 * 10 9 7 12 12 C 1.38255 * 107.90548 * 179.97438 * 11 10 9 13 13 C 1.41139 * 134.77810 * 179.97438 * 12 11 10 14 14 C 1.35610 * 119.56914 * 179.97438 * 13 12 11 15 15 C 1.39887 * 121.70678 * 0.03382 * 14 13 12 16 16 F 1.35094 * 119.12441 * 179.97438 * 15 14 13 17 17 C 1.35849 * 121.75394 * 359.97438 * 15 14 13 18 18 C 1.41141 * 119.58093 * 359.97438 * 17 15 14 19 19 N 1.32066 * 134.65420 * 180.02562 * 18 17 15 20 20 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46833 * 60.00645 * 9 7 2 22 22 H 1.09003 * 109.47761 * 300.00479 * 9 7 2 23 23 H 1.07997 * 126.04309 * 0.23963 * 11 10 9 24 24 H 1.07998 * 120.21372 * 0.03123 * 13 12 11 25 25 H 1.07997 * 119.14836 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.20654 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.8493 -3.0906 -0.8990 12 6 5.0703 -4.4139 -0.5652 13 6 5.8446 -5.4607 -1.1100 14 6 5.8357 -6.6793 -0.5151 15 6 5.0752 -6.9321 0.6315 16 9 5.1046 -8.1658 1.1811 17 6 4.3080 -5.9700 1.2070 18 6 4.2705 -4.6775 0.6412 19 7 3.6503 -3.5507 0.9407 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8747 -0.6808 -0.8905 23 1 5.2874 -2.5640 -1.7339 24 1 6.4410 -5.2920 -1.9945 25 1 6.4309 -7.4752 -0.9375 26 1 3.7309 -6.1925 2.0924 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200495.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 47.604708 kcal Electronic energy + Delta-G solvation = -13749.811367 eV Core-core repulsion = 11130.666153 eV Total energy + Delta-G solvation = -2619.145214 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.64999 -40.75871 -36.73855 -33.46658 -31.99911 -31.01515 -28.53171 -27.77456 -24.03804 -21.91675 -21.42814 -20.23561 -17.48735 -17.04625 -16.68998 -16.12219 -15.36856 -14.95262 -14.60794 -14.20924 -13.77166 -13.55711 -12.85705 -12.57531 -12.51969 -12.01469 -11.47201 -11.31003 -10.95477 -10.84222 -10.27301 -9.96973 -9.84522 -9.60057 -8.89384 -8.01819 -7.34443 -6.35713 -4.40845 0.93502 1.98392 2.85197 3.01146 3.07317 3.11792 3.20006 4.03179 4.10966 4.44504 4.62827 4.91832 5.06238 5.24628 5.48797 5.60264 5.70478 5.77616 6.15864 6.34907 6.41280 6.44256 6.56963 6.85079 7.05136 7.24705 7.37780 8.13195 8.23179 8.72633 9.16476 10.76512 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.061046 B = 0.006356 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.563541 B = 4404.180154 C = 4680.543548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.088 0.912 9 C 0.217 3.783 10 N -0.266 5.266 11 C 0.076 3.924 12 C -0.235 4.235 13 C -0.002 4.002 14 C -0.207 4.207 15 C 0.125 3.875 16 F -0.147 7.147 17 C -0.136 4.136 18 C 0.097 3.903 19 N -0.280 5.280 20 H 0.271 0.729 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.182 0.818 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.126 -6.717 -2.779 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.106 0.894 9 C 0.098 3.902 10 N -0.036 5.036 11 C -0.084 4.084 12 C -0.245 4.245 13 C -0.022 4.022 14 C -0.227 4.227 15 C 0.102 3.898 16 F -0.126 7.126 17 C -0.158 4.158 18 C -0.056 4.056 19 N -0.107 5.107 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.199 0.801 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.019 -5.831 -1.886 12.609 hybrid contribution 0.766 0.410 -0.511 1.008 sum 11.785 -5.421 -2.397 13.192 Atomic orbital electron populations 1.69864 1.06165 1.27566 1.48141 1.24815 0.94899 0.98804 0.93985 0.86904 0.80417 0.83769 0.79009 1.19562 1.20285 1.18858 1.20991 0.87069 0.96065 1.53847 0.89367 1.20379 0.98285 0.72397 0.99090 1.49222 1.26604 1.11675 1.16130 1.22708 0.95485 0.93859 0.96371 1.19579 1.08702 0.94435 1.01780 1.20014 0.94592 0.90462 0.97138 1.20269 1.05455 0.98777 0.98224 1.16959 0.99154 0.79606 0.94102 1.91457 1.95429 1.40511 1.85163 1.19561 1.03639 0.89951 1.02665 1.20526 0.96441 0.93552 0.95082 1.77942 1.23277 0.96172 1.13349 0.91913 0.92874 0.92767 0.80102 0.85483 0.85525 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.43 0.77 -24.92 15 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 15 3 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 15 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.26 -5.44 6.54 56.52 0.37 -5.07 15 7 C -0.54 -14.70 9.76 -34.44 -0.34 -15.03 15 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 15 9 C 0.22 4.79 5.27 -5.19 -0.03 4.76 15 10 N -0.27 -5.61 3.62 -62.00 -0.22 -5.84 15 11 C 0.08 1.28 11.45 -16.60 -0.19 1.09 15 12 C -0.23 -4.01 6.33 -105.19 -0.67 -4.68 15 13 C 0.00 -0.02 10.08 -39.42 -0.40 -0.42 15 14 C -0.21 -2.81 9.86 -39.90 -0.39 -3.20 15 15 C 0.13 1.94 7.20 -39.82 -0.29 1.65 15 16 F -0.15 -2.20 17.22 2.25 0.04 -2.16 15 17 C -0.14 -2.36 10.03 -39.34 -0.39 -2.75 15 18 C 0.10 1.93 7.49 -83.06 -0.62 1.31 15 19 N -0.28 -6.39 12.34 33.25 0.41 -5.98 15 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.05 1.17 7.20 -51.93 -0.37 0.79 15 22 H 0.05 1.05 7.47 -51.93 -0.39 0.66 15 23 H 0.18 2.19 8.06 -52.49 -0.42 1.76 15 24 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.13 2.17 8.06 -52.49 -0.42 1.74 15 LS Contribution 241.58 15.07 3.64 3.64 Total: -1.00 -30.59 241.58 -5.48 -36.08 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.04 Total: -0.12 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.41 Total: -15.21 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.96 Total: -36.74 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.59 -5.48 -36.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200495.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.680 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds