Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99845 * 3 2 1 5 5 H 1.48504 * 109.47421 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47434 * 149.99854 * 3 2 1 7 7 C 1.37878 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99991 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99771 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.33987 * 125.01880 * 125.00339 * 10 9 7 12 12 C 1.38255 * 107.90548 * 179.97438 * 11 10 9 13 13 C 1.41139 * 134.77810 * 179.97438 * 12 11 10 14 14 C 1.35610 * 119.56914 * 179.97438 * 13 12 11 15 15 C 1.39887 * 121.70678 * 0.03382 * 14 13 12 16 16 F 1.35094 * 119.12441 * 179.97438 * 15 14 13 17 17 C 1.35849 * 121.75394 * 359.97438 * 15 14 13 18 18 C 1.41141 * 119.58093 * 359.97438 * 17 15 14 19 19 N 1.32066 * 134.65420 * 180.02562 * 18 17 15 20 20 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46833 * 60.00645 * 9 7 2 22 22 H 1.09003 * 109.47761 * 300.00479 * 9 7 2 23 23 H 1.07997 * 126.04309 * 0.23963 * 11 10 9 24 24 H 1.07998 * 120.21372 * 0.03123 * 13 12 11 25 25 H 1.07997 * 119.14836 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.20654 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.8493 -3.0906 -0.8990 12 6 5.0703 -4.4139 -0.5652 13 6 5.8446 -5.4607 -1.1100 14 6 5.8357 -6.6793 -0.5151 15 6 5.0752 -6.9321 0.6315 16 9 5.1046 -8.1658 1.1811 17 6 4.3080 -5.9700 1.2070 18 6 4.2705 -4.6775 0.6412 19 7 3.6503 -3.5507 0.9407 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8747 -0.6808 -0.8905 23 1 5.2874 -2.5640 -1.7339 24 1 6.4410 -5.2920 -1.9945 25 1 6.4309 -7.4752 -0.9375 26 1 3.7309 -6.1925 2.0924 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200495.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 27.330751 kcal Electronic energy + Delta-G solvation = -13750.690511 eV Core-core repulsion = 11130.666153 eV Total energy + Delta-G solvation = -2620.024358 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.90424 -42.13824 -38.03477 -35.33696 -33.53131 -32.49924 -29.87460 -29.39846 -25.64017 -23.34690 -22.84182 -21.58842 -19.27283 -18.58719 -18.09803 -17.33792 -16.67263 -16.53335 -16.09442 -15.72150 -15.16867 -14.77283 -14.54801 -14.10421 -13.96784 -13.34285 -13.03299 -12.67897 -12.52812 -12.38226 -11.84434 -11.79072 -11.25665 -11.11157 -10.89992 -9.41368 -8.66965 -8.41325 -6.54278 -0.31961 0.75303 1.34989 1.37763 1.46633 1.51362 1.67345 2.26457 2.77068 2.90286 3.15087 3.44374 3.85287 4.11151 4.23802 4.32177 4.38157 4.57522 4.59752 4.86175 5.14489 5.18397 5.22432 5.39435 5.59954 5.82932 5.99685 6.24076 6.51640 6.80641 7.08665 8.75811 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.061046 B = 0.006356 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.563541 B = 4404.180154 C = 4680.543548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.247 1.247 5 H -0.283 1.283 6 H -0.237 1.237 7 C -0.554 4.554 8 H 0.023 0.977 9 C 0.224 3.776 10 N -0.296 5.296 11 C 0.097 3.903 12 C -0.249 4.249 13 C 0.019 3.981 14 C -0.210 4.210 15 C 0.144 3.856 16 F -0.143 7.143 17 C -0.179 4.179 18 C 0.081 3.919 19 N -0.356 5.356 20 H 0.274 0.726 21 H 0.054 0.946 22 H 0.097 0.903 23 H 0.237 0.763 24 H 0.179 0.821 25 H 0.166 0.834 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.791 -6.261 -4.959 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.171 1.171 5 H -0.209 1.209 6 H -0.160 1.160 7 C -0.592 4.592 8 H 0.042 0.958 9 C 0.105 3.895 10 N -0.066 5.066 11 C -0.062 4.062 12 C -0.259 4.259 13 C -0.001 4.001 14 C -0.230 4.230 15 C 0.121 3.879 16 F -0.121 7.121 17 C -0.201 4.201 18 C -0.072 4.072 19 N -0.184 5.184 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.115 0.885 23 H 0.253 0.747 24 H 0.197 0.803 25 H 0.183 0.817 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.708 -5.420 -4.067 16.194 hybrid contribution -0.363 0.017 0.145 0.392 sum 14.345 -5.403 -3.921 15.822 Atomic orbital electron populations 1.70060 1.08780 1.29023 1.50107 1.25982 0.95792 1.03759 0.92921 0.85568 0.79442 0.76709 0.80345 1.17136 1.20899 1.15956 1.21142 0.90291 0.93823 1.53925 0.95849 1.20201 0.94547 0.73931 1.00799 1.49057 1.28730 1.11255 1.17605 1.23650 0.92928 0.93852 0.95768 1.20050 1.09161 0.95627 1.01056 1.20544 0.92995 0.88819 0.97768 1.20700 1.05089 1.00102 0.97079 1.17210 0.97724 0.78951 0.94013 1.91470 1.95238 1.40192 1.85244 1.19626 1.06220 0.90323 1.03966 1.20921 0.96443 0.93381 0.96480 1.77815 1.26509 0.97988 1.16093 0.91732 0.92779 0.88537 0.74725 0.80348 0.81696 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.96 21.45 0.30 -57.15 15 2 C 0.01 0.81 5.47 84.65 0.46 1.27 15 3 Si 0.96 38.95 27.47 68.60 1.88 40.84 15 4 H -0.25 -9.13 7.11 99.48 0.71 -8.43 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.24 -8.50 6.54 99.48 0.65 -7.85 15 7 C -0.55 -31.28 9.76 25.60 0.25 -31.03 15 8 H 0.02 1.57 8.06 -2.91 -0.02 1.55 15 9 C 0.22 9.73 5.27 85.63 0.45 10.18 15 10 N -0.30 -12.47 3.62 -350.05 -1.27 -13.73 15 11 C 0.10 2.99 11.45 84.37 0.97 3.95 15 12 C -0.25 -7.91 6.33 -20.23 -0.13 -8.04 15 13 C 0.02 0.42 10.08 22.37 0.23 0.64 15 14 C -0.21 -4.83 9.86 22.06 0.22 -4.61 15 15 C 0.14 4.26 7.20 22.11 0.16 4.42 15 16 F -0.14 -4.05 17.22 44.97 0.77 -3.27 15 17 C -0.18 -6.41 10.03 22.43 0.23 -6.19 15 18 C 0.08 3.29 7.49 42.15 0.32 3.60 15 19 N -0.36 -17.12 12.34 -48.72 -0.60 -17.72 15 20 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 21 H 0.05 2.31 7.20 -2.39 -0.02 2.29 15 22 H 0.10 3.36 7.47 -2.39 -0.02 3.35 15 23 H 0.24 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.18 2.21 8.06 -2.91 -0.02 2.18 15 25 H 0.17 2.59 8.06 -2.91 -0.02 2.57 15 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -74.26 241.58 5.38 -68.88 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.14 Total: 7.96 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 3.15 Total: -25.80 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -1.57 Total: -88.60 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.88 Total: 40.84 kcal Total: -74.26 5.38 -68.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200495.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.209 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds