Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86802 * 120.00331 * 2 1 4 4 H 1.48494 * 109.47278 * 240.00319 * 3 2 1 5 5 H 1.48507 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47264 * 119.99966 * 3 2 1 7 7 C 1.40278 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.40855 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.46567 * 120.36614 * 179.97438 * 9 7 2 11 11 C 1.35061 * 118.47988 * 180.02562 * 10 9 7 12 12 N 1.36611 * 119.30112 * 0.02562 * 11 10 9 13 13 N 1.40293 * 132.59637 * 179.97438 * 12 11 10 14 14 C 1.31448 * 107.07106 * 180.02562 * 13 12 11 15 15 C 1.50700 * 125.13213 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47328 * 89.99568 * 15 14 13 17 17 N 1.32264 * 109.74192 * 359.97438 * 14 13 12 18 18 C 1.33400 * 109.78372 * 0.02562 * 17 14 13 19 19 N 1.33038 * 131.80495 * 179.97438 * 18 17 14 20 20 H 0.97004 * 120.00366 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.75758 * 0.02562 * 10 9 7 22 22 H 1.07996 * 120.34810 * 180.02562 * 11 10 9 23 23 H 1.09005 * 109.47356 * 209.99994 * 15 14 13 24 24 H 1.09001 * 109.46999 * 329.99296 * 15 14 13 25 25 H 0.96703 * 114.00363 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7465 0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0073 -1.2148 -0.0005 8 1 3.0872 -1.2148 -0.0010 9 6 1.3030 -2.4347 -0.0005 10 6 2.0277 -3.7086 -0.0017 11 6 1.3142 -4.8554 -0.0022 12 7 -0.0505 -4.7938 -0.0021 13 7 -1.0457 -5.7826 -0.0030 14 6 -2.2051 -5.1633 -0.0030 15 6 -3.5507 -5.8417 -0.0044 16 8 -3.9768 -6.0575 1.3424 17 7 -2.0126 -3.8547 -0.0017 18 6 -0.7050 -3.5907 -0.0013 19 7 -0.0319 -2.4431 -0.0005 20 1 -0.4851 0.8400 0.0004 21 1 3.1075 -3.7298 -0.0021 22 1 1.8173 -5.8110 -0.0026 23 1 -4.2756 -5.2101 -0.5181 24 1 -3.4742 -6.7994 -0.5192 25 1 -4.8374 -6.4920 1.4179 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261203791.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = 75.383052 kcal Electronic energy + Delta-G solvation = -14112.164493 eV Core-core repulsion = 11514.143800 eV Total energy + Delta-G solvation = -2598.020693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03986 -37.28825 -36.18268 -34.07441 -32.36784 -30.38869 -29.12986 -27.60925 -25.82270 -22.34713 -21.89172 -19.71099 -18.08697 -17.25586 -16.73199 -16.29881 -15.19648 -14.82371 -14.35617 -14.01170 -13.61305 -13.05575 -12.60755 -11.85753 -11.60714 -11.42169 -11.23308 -11.07459 -10.97542 -10.51593 -10.49193 -9.87432 -9.46525 -8.74498 -8.29726 -7.99660 -7.45456 -6.78873 -5.15316 2.09129 2.30632 2.91506 2.94743 2.95100 3.35515 3.59556 3.67408 4.39228 4.64929 5.09364 5.23191 5.41983 5.46090 5.63616 5.77782 5.99406 6.35519 6.59953 6.67354 6.90720 7.43551 7.55424 7.64211 7.86103 7.95287 8.06138 8.34742 9.29103 9.79248 9.92915 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.048496 B = 0.007763 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.231557 B = 3606.045895 C = 4103.480851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.667 5.667 2 C 0.053 3.947 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.370 4.370 8 H 0.101 0.899 9 C 0.261 3.739 10 C -0.225 4.225 11 C 0.119 3.881 12 N -0.383 5.383 13 N -0.384 5.384 14 C 0.251 3.749 15 C 0.181 3.819 16 O -0.564 6.564 17 N -0.574 5.574 18 C 0.485 3.515 19 N -0.501 5.501 20 H 0.287 0.713 21 H 0.142 0.858 22 H 0.146 0.854 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -3.163 -0.916 3.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.287 5.287 2 C -0.178 4.178 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.405 4.405 8 H 0.119 0.881 9 C 0.126 3.874 10 C -0.252 4.252 11 C -0.009 4.009 12 N -0.167 5.167 13 N -0.222 5.222 14 C -0.032 4.032 15 C 0.101 3.899 16 O -0.368 6.368 17 N -0.316 5.316 18 C 0.126 3.874 19 N -0.231 5.231 20 H 0.099 0.901 21 H 0.160 0.840 22 H 0.164 0.836 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.382 -2.650 -0.782 2.789 hybrid contribution 0.595 -0.276 -0.134 0.669 sum 0.976 -2.926 -0.915 3.218 Atomic orbital electron populations 1.70047 1.07538 1.29600 1.21520 1.26318 0.95154 1.01910 0.94459 0.86145 0.80007 0.79263 0.80260 1.18450 1.19717 1.18448 1.19762 0.94960 0.88762 1.37042 0.88125 1.19822 0.87350 0.91380 0.88824 1.22916 1.00266 0.92481 1.09545 1.21211 0.80274 0.99787 0.99607 1.48435 1.05426 1.08542 1.54249 1.78020 0.95278 1.11229 1.37723 1.23363 0.93970 0.89279 0.96582 1.19933 0.88718 0.97420 0.83830 1.86573 1.40694 1.83262 1.26224 1.70674 1.11623 1.13526 1.35778 1.23468 0.89150 0.82737 0.92038 1.69235 1.06455 1.16117 1.31343 0.90146 0.84045 0.83638 0.91106 0.91814 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -17.00 11.49 55.56 0.64 -16.37 15 2 C 0.05 1.22 5.50 -17.31 -0.10 1.12 15 3 Si 0.92 16.43 29.56 -169.99 -5.03 11.41 15 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 6 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 7 C -0.37 -8.66 9.19 -37.83 -0.35 -9.01 15 8 H 0.10 2.02 7.85 -52.49 -0.41 1.61 15 9 C 0.26 6.65 6.72 -82.80 -0.56 6.09 15 10 C -0.22 -4.75 10.06 -37.35 -0.38 -5.12 15 11 C 0.12 2.58 11.29 -16.55 -0.19 2.39 15 12 N -0.38 -9.89 3.91 -13.83 -0.05 -9.94 15 13 N -0.38 -9.66 12.79 32.37 0.41 -9.25 15 14 C 0.25 6.14 7.71 -157.09 -1.21 4.92 15 15 C 0.18 3.20 7.67 36.01 0.28 3.48 15 16 O -0.56 -9.58 13.64 -35.23 -0.48 -10.06 15 17 N -0.57 -16.09 11.26 -11.79 -0.13 -16.23 15 18 C 0.49 13.86 8.97 -323.00 -2.90 10.96 15 19 N -0.50 -14.41 8.03 -10.63 -0.09 -14.50 15 20 H 0.29 6.57 8.29 -40.82 -0.34 6.23 15 21 H 0.14 2.36 8.06 -52.48 -0.42 1.94 15 22 H 0.15 2.53 8.06 -52.49 -0.42 2.10 15 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 25 H 0.38 3.75 9.12 45.56 0.42 4.17 15 LS Contribution 236.78 15.07 3.57 3.57 Total: -1.00 -34.60 236.78 -7.37 -41.97 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -0.82 Total: 4.55 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: -5.39 Total: 14.84 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: 0.78 Total: -66.28 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.48 Total: -10.06 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.60 -7.37 -41.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203791.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.356 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds