Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86802 * 120.00331 * 2 1 4 4 H 1.48494 * 109.47278 * 240.00319 * 3 2 1 5 5 H 1.48507 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47264 * 119.99966 * 3 2 1 7 7 C 1.40278 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.40855 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.46567 * 120.36614 * 179.97438 * 9 7 2 11 11 C 1.35061 * 118.47988 * 180.02562 * 10 9 7 12 12 N 1.36611 * 119.30112 * 0.02562 * 11 10 9 13 13 N 1.40293 * 132.59637 * 179.97438 * 12 11 10 14 14 C 1.31448 * 107.07106 * 180.02562 * 13 12 11 15 15 C 1.50700 * 125.13213 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47328 * 89.99568 * 15 14 13 17 17 N 1.32264 * 109.74192 * 359.97438 * 14 13 12 18 18 C 1.33400 * 109.78372 * 0.02562 * 17 14 13 19 19 N 1.33038 * 131.80495 * 179.97438 * 18 17 14 20 20 H 0.97004 * 120.00366 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.75758 * 0.02562 * 10 9 7 22 22 H 1.07996 * 120.34810 * 180.02562 * 11 10 9 23 23 H 1.09005 * 109.47356 * 209.99994 * 15 14 13 24 24 H 1.09001 * 109.46999 * 329.99296 * 15 14 13 25 25 H 0.96703 * 114.00363 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7465 0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0073 -1.2148 -0.0005 8 1 3.0872 -1.2148 -0.0010 9 6 1.3030 -2.4347 -0.0005 10 6 2.0277 -3.7086 -0.0017 11 6 1.3142 -4.8554 -0.0022 12 7 -0.0505 -4.7938 -0.0021 13 7 -1.0457 -5.7826 -0.0030 14 6 -2.2051 -5.1633 -0.0030 15 6 -3.5507 -5.8417 -0.0044 16 8 -3.9768 -6.0575 1.3424 17 7 -2.0126 -3.8547 -0.0017 18 6 -0.7050 -3.5907 -0.0013 19 7 -0.0319 -2.4431 -0.0005 20 1 -0.4851 0.8400 0.0004 21 1 3.1075 -3.7298 -0.0021 22 1 1.8173 -5.8110 -0.0026 23 1 -4.2756 -5.2101 -0.5181 24 1 -3.4742 -6.7994 -0.5192 25 1 -4.8374 -6.4920 1.4179 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261203791.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = 50.140079 kcal Electronic energy + Delta-G solvation = -14113.259110 eV Core-core repulsion = 11514.143800 eV Total energy + Delta-G solvation = -2599.115310 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.90003 -39.00220 -37.59994 -35.84362 -34.24296 -32.14750 -30.99145 -29.31031 -27.47721 -24.12437 -23.74214 -21.48414 -19.89179 -18.57980 -18.52308 -18.07974 -16.87655 -16.68904 -15.88630 -15.42714 -15.18761 -14.65807 -14.22580 -13.53614 -13.18508 -13.05558 -12.99598 -12.80818 -12.54983 -12.34695 -11.98047 -11.18651 -11.14787 -10.68247 -10.12324 -9.86825 -9.34053 -8.54805 -7.03172 0.35466 0.46544 1.44908 1.54203 1.61415 1.63173 1.86025 2.16878 2.63124 3.02887 3.44297 3.52810 3.87804 3.93452 4.18743 4.35468 4.46963 4.77582 4.90135 4.94437 5.12597 5.65727 5.70987 5.89502 6.16573 6.29051 6.50565 6.92739 7.39788 7.93650 8.18640 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.048496 B = 0.007763 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.231557 B = 3606.045895 C = 4103.480851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.007 3.993 3 Si 1.007 2.993 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.375 4.375 8 H 0.136 0.864 9 C 0.218 3.782 10 C -0.213 4.213 11 C 0.102 3.898 12 N -0.396 5.396 13 N -0.395 5.395 14 C 0.240 3.760 15 C 0.186 3.814 16 O -0.586 6.586 17 N -0.617 5.617 18 C 0.454 3.546 19 N -0.546 5.546 20 H 0.291 0.709 21 H 0.191 0.809 22 H 0.189 0.811 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -3.105 -0.987 4.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.220 4.220 3 Si 0.825 3.175 4 H -0.170 1.170 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.409 4.409 8 H 0.154 0.846 9 C 0.085 3.915 10 C -0.239 4.239 11 C -0.024 4.024 12 N -0.180 5.180 13 N -0.232 5.232 14 C -0.043 4.043 15 C 0.106 3.894 16 O -0.395 6.395 17 N -0.360 5.360 18 C 0.095 3.905 19 N -0.278 5.278 20 H 0.102 0.898 21 H 0.208 0.792 22 H 0.206 0.794 23 H 0.106 0.894 24 H 0.115 0.885 25 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.160 -2.646 -0.850 3.520 hybrid contribution 0.063 -0.275 -0.094 0.297 sum 2.223 -2.921 -0.944 3.791 Atomic orbital electron populations 1.70207 1.10069 1.31004 1.22739 1.27549 0.95664 1.06075 0.92720 0.84873 0.78277 0.73342 0.81046 1.16965 1.20085 1.17107 1.20508 0.96725 0.88638 1.35058 0.84599 1.20527 0.87125 0.94080 0.89755 1.23282 1.02270 0.90554 1.07763 1.21985 0.78953 1.01998 0.99457 1.48565 1.06827 1.07840 1.54776 1.77897 0.95589 1.11573 1.38185 1.24578 0.96244 0.88463 0.95025 1.20121 0.85951 0.98756 0.84600 1.86481 1.43159 1.83995 1.25847 1.70625 1.12278 1.15685 1.37405 1.23642 0.89907 0.83802 0.93197 1.69194 1.08490 1.17006 1.33155 0.89788 0.79219 0.79375 0.89415 0.88471 0.73870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -37.60 11.49 21.88 0.25 -37.35 15 2 C 0.01 0.32 5.50 85.37 0.47 0.79 15 3 Si 1.01 32.34 29.56 68.60 2.03 34.37 15 4 H -0.25 -7.33 7.11 99.48 0.71 -6.62 15 5 H -0.28 -8.93 7.11 99.48 0.71 -8.22 15 6 H -0.25 -7.42 7.11 99.48 0.71 -6.72 15 7 C -0.37 -17.11 9.19 23.41 0.22 -16.89 15 8 H 0.14 5.02 7.85 -2.91 -0.02 4.99 15 9 C 0.22 11.12 6.72 41.71 0.28 11.40 15 10 C -0.21 -8.63 10.06 23.71 0.24 -8.39 15 11 C 0.10 4.28 11.29 83.22 0.94 5.22 15 12 N -0.40 -20.64 3.91 -197.68 -0.77 -21.42 15 13 N -0.39 -19.92 12.79 -51.50 -0.66 -20.58 15 14 C 0.24 11.84 7.71 138.71 1.07 12.91 15 15 C 0.19 6.35 7.67 71.24 0.55 6.90 15 16 O -0.59 -19.15 13.64 -148.98 -2.03 -21.18 15 17 N -0.62 -35.75 11.26 -191.22 -2.15 -37.90 15 18 C 0.45 26.84 8.97 261.55 2.35 29.18 15 19 N -0.55 -32.45 8.03 -187.55 -1.51 -33.95 15 20 H 0.29 13.74 8.29 -92.71 -0.77 12.97 15 21 H 0.19 5.60 8.06 -2.91 -0.02 5.58 15 22 H 0.19 6.04 8.06 -2.91 -0.02 6.01 15 23 H 0.09 2.66 8.14 -2.38 -0.02 2.64 15 24 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.41 7.24 9.12 -74.05 -0.68 6.56 15 Total: -1.00 -78.93 236.78 1.83 -77.10 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.57 Total: 19.81 kcal Atomic # 6 Polarization: 35.01 SS G_CDS: 6.10 Total: 41.11 kcal Atomic # 7 Polarization: -146.37 SS G_CDS: -4.84 Total: -151.21 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -2.03 Total: -21.18 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Total: -78.93 1.83 -77.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203791.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.237 kcal (2) G-P(sol) polarization free energy of solvation -78.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds