Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35593 * 117.00584 * 2 1 4 4 N 1.33318 * 119.19917 * 0.02562 * 3 2 1 5 5 C 1.31499 * 121.83141 * 179.97438 * 4 3 2 6 6 C 1.40396 * 119.68823 * 0.28143 * 5 4 3 7 7 N 1.33194 * 133.01124 * 179.71590 * 6 5 4 8 8 C 1.31845 * 109.94349 * 180.02562 * 7 6 5 9 9 C 1.40552 * 108.04475 * 359.46757 * 8 7 6 10 10 C 1.39792 * 126.90228 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00230 * 180.78719 * 10 9 8 12 12 C 1.40083 * 120.00081 * 0.78572 * 10 9 8 13 13 N 1.30875 * 119.99943 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46606 * 90.00461 * 14 12 10 16 16 H 1.48496 * 109.47007 * 210.00143 * 14 12 10 17 17 H 1.48504 * 109.46878 * 330.00572 * 14 12 10 18 18 N 1.37263 * 118.25186 * 359.42851 * 6 5 4 19 19 N 1.31454 * 119.20591 * 179.97438 * 3 2 1 20 20 H 1.09003 * 109.47141 * 59.99322 * 1 2 3 21 21 H 1.08993 * 109.47423 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46493 * 299.99826 * 1 2 3 23 23 H 1.08002 * 120.15320 * 179.97438 * 5 4 3 24 24 H 1.07992 * 125.97983 * 180.02562 * 8 7 6 25 25 H 0.96994 * 120.00334 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 7 1.3032 2.3160 0.0005 5 6 1.8458 3.5138 0.0010 6 6 3.2438 3.6438 -0.0049 7 7 4.0582 4.6977 -0.0108 8 6 5.3138 4.2957 -0.0154 9 6 5.3211 2.8903 0.0000 10 6 6.4432 2.0567 0.0006 11 1 6.3190 0.9838 0.0005 12 6 7.7290 2.6128 0.0012 13 7 7.8796 3.9128 0.0018 14 14 9.2285 1.4988 0.0027 15 1 9.6267 1.2031 -1.3970 16 1 10.3484 2.1772 0.7033 17 1 8.9022 0.2305 0.7030 18 7 4.0027 2.5001 0.0009 19 7 3.3583 1.2585 0.0005 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.2191 4.3933 0.0010 24 1 6.1845 4.9346 -0.0203 25 1 8.7698 4.2979 0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207043.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = 92.810799 kcal Electronic energy + Delta-G solvation = -14271.203157 eV Core-core repulsion = 11673.938188 eV Total energy + Delta-G solvation = -2597.264969 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93809 -38.92819 -36.42895 -34.08736 -33.02049 -29.90712 -29.18207 -26.87655 -26.04147 -23.54991 -21.80926 -20.31197 -18.60404 -18.01206 -16.79488 -15.86155 -15.67416 -14.71118 -14.51531 -14.31440 -13.67387 -13.12834 -12.70141 -12.20314 -11.74701 -11.64570 -11.55699 -11.48962 -10.85502 -10.84616 -10.53962 -10.17411 -9.71261 -9.06440 -8.44896 -7.92915 -7.51667 -7.16203 -4.66433 1.31154 2.45852 2.61820 2.92474 2.96114 3.00239 3.66814 3.90295 4.03816 4.58309 4.81143 4.94906 5.27697 5.43983 5.52121 5.66721 5.86095 6.36329 6.64932 6.69559 6.99192 7.30719 7.35153 7.67695 8.03722 8.12777 8.23276 8.42252 9.13520 9.25273 9.79078 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040694 B = 0.008702 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.891717 B = 3216.862043 C = 3889.599485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.297 6.297 3 C 0.464 3.536 4 N -0.641 5.641 5 C 0.303 3.697 6 C -0.044 4.044 7 N -0.426 5.426 8 C -0.016 4.016 9 C 0.238 3.762 10 C -0.403 4.403 11 H 0.093 0.907 12 C 0.074 3.926 13 N -0.784 5.784 14 Si 0.942 3.058 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.258 1.258 18 N -0.319 5.319 19 N -0.331 5.331 20 H 0.057 0.943 21 H 0.095 0.905 22 H 0.057 0.943 23 H 0.171 0.829 24 H 0.213 0.787 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -2.149 -0.010 4.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.198 6.198 3 C 0.150 3.850 4 N -0.374 5.374 5 C 0.125 3.875 6 C -0.272 4.272 7 N -0.148 5.148 8 C -0.187 4.187 9 C 0.117 3.883 10 C -0.440 4.440 11 H 0.111 0.889 12 C -0.147 4.147 13 N -0.411 5.411 14 Si 0.765 3.235 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.181 1.181 18 N -0.104 5.104 19 N -0.164 5.164 20 H 0.076 0.924 21 H 0.113 0.887 22 H 0.076 0.924 23 H 0.188 0.812 24 H 0.229 0.771 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.489 -2.505 -0.002 5.141 hybrid contribution 0.826 -0.547 0.002 0.991 sum -3.663 -3.052 0.000 4.768 Atomic orbital electron populations 1.22801 0.76771 1.02342 1.02471 1.86027 1.22495 1.22427 1.88862 1.20946 0.86911 0.84962 0.92189 1.67842 1.39660 0.98095 1.31849 1.21997 0.88425 0.94168 0.82909 1.20921 0.94723 0.84591 1.26984 1.69778 1.02821 1.28321 1.13848 1.24417 0.93590 0.91531 1.09204 1.19108 0.79065 0.93927 0.96174 1.18822 0.88143 0.95368 1.41628 0.88860 1.26001 1.01142 0.95924 0.91662 1.69447 1.26440 1.11758 1.33432 0.85733 0.78034 0.80062 0.79694 1.18867 1.19586 1.18147 1.45564 1.06186 1.00652 1.57959 1.75428 1.06139 1.04184 1.30606 0.92408 0.88710 0.92399 0.81161 0.77111 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.36 101.05 1.05 1.79 15 2 O -0.30 -5.94 10.56 -18.48 -0.20 -6.13 15 3 C 0.46 10.79 8.58 -91.12 -0.78 10.01 15 4 N -0.64 -13.70 9.18 -14.37 -0.13 -13.83 15 5 C 0.30 6.42 11.33 -16.88 -0.19 6.23 15 6 C -0.04 -1.11 7.89 -155.53 -1.23 -2.34 15 7 N -0.43 -10.83 11.22 -11.76 -0.13 -10.96 15 8 C -0.02 -0.40 10.85 -16.67 -0.18 -0.58 15 9 C 0.24 6.45 6.94 -83.87 -0.58 5.87 15 10 C -0.40 -10.36 9.44 -38.31 -0.36 -10.72 15 11 H 0.09 2.41 7.85 -52.48 -0.41 2.00 15 12 C 0.07 1.69 5.50 -17.27 -0.09 1.59 15 13 N -0.78 -17.75 10.31 55.56 0.57 -17.18 15 14 Si 0.94 17.18 29.56 -169.99 -5.03 12.16 15 15 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 16 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 18 N -0.32 -8.67 4.11 -9.86 -0.04 -8.71 15 19 N -0.33 -8.73 12.04 29.15 0.35 -8.38 15 20 H 0.06 0.79 8.09 -51.93 -0.42 0.37 15 21 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.06 0.79 8.09 -51.93 -0.42 0.37 15 23 H 0.17 2.82 8.06 -52.49 -0.42 2.39 15 24 H 0.21 5.25 5.74 -52.49 -0.30 4.95 15 25 H 0.29 5.84 8.30 -40.82 -0.34 5.50 15 LS Contribution 233.46 15.07 3.52 3.52 Total: -1.00 -29.58 233.46 -4.99 -34.57 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -1.53 Total: 3.10 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -2.37 Total: 11.85 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.62 Total: -59.06 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.20 Total: -6.13 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.58 -4.99 -34.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207043.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.378 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds