Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35593 * 117.00584 * 2 1 4 4 N 1.33318 * 119.19917 * 0.02562 * 3 2 1 5 5 C 1.31499 * 121.83141 * 179.97438 * 4 3 2 6 6 C 1.40396 * 119.68823 * 0.28143 * 5 4 3 7 7 N 1.33194 * 133.01124 * 179.71590 * 6 5 4 8 8 C 1.31845 * 109.94349 * 180.02562 * 7 6 5 9 9 C 1.40552 * 108.04475 * 359.46757 * 8 7 6 10 10 C 1.39792 * 126.90228 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00230 * 180.78719 * 10 9 8 12 12 C 1.40083 * 120.00081 * 0.78572 * 10 9 8 13 13 N 1.30875 * 119.99943 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46606 * 90.00461 * 14 12 10 16 16 H 1.48496 * 109.47007 * 210.00143 * 14 12 10 17 17 H 1.48504 * 109.46878 * 330.00572 * 14 12 10 18 18 N 1.37263 * 118.25186 * 359.42851 * 6 5 4 19 19 N 1.31454 * 119.20591 * 179.97438 * 3 2 1 20 20 H 1.09003 * 109.47141 * 59.99322 * 1 2 3 21 21 H 1.08993 * 109.47423 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46493 * 299.99826 * 1 2 3 23 23 H 1.08002 * 120.15320 * 179.97438 * 5 4 3 24 24 H 1.07992 * 125.97983 * 180.02562 * 8 7 6 25 25 H 0.96994 * 120.00334 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 7 1.3032 2.3160 0.0005 5 6 1.8458 3.5138 0.0010 6 6 3.2438 3.6438 -0.0049 7 7 4.0582 4.6977 -0.0108 8 6 5.3138 4.2957 -0.0154 9 6 5.3211 2.8903 0.0000 10 6 6.4432 2.0567 0.0006 11 1 6.3190 0.9838 0.0005 12 6 7.7290 2.6128 0.0012 13 7 7.8796 3.9128 0.0018 14 14 9.2285 1.4988 0.0027 15 1 9.6267 1.2031 -1.3970 16 1 10.3484 2.1772 0.7033 17 1 8.9022 0.2305 0.7030 18 7 4.0027 2.5001 0.0009 19 7 3.3583 1.2585 0.0005 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.2191 4.3933 0.0010 24 1 6.1845 4.9346 -0.0203 25 1 8.7698 4.2979 0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207043.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = 70.039103 kcal Electronic energy + Delta-G solvation = -14272.190612 eV Core-core repulsion = 11673.938188 eV Total energy + Delta-G solvation = -2598.252424 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.80399 -40.60050 -38.13442 -35.88503 -34.87831 -31.73511 -31.01833 -28.30514 -27.77153 -25.36909 -23.60276 -22.21507 -20.36329 -19.73458 -18.63099 -17.50304 -17.38998 -16.44820 -16.05795 -16.02977 -15.24046 -14.76845 -14.56792 -13.80571 -13.54979 -13.29205 -13.02323 -12.89070 -12.69921 -12.58696 -12.01058 -11.79054 -11.37582 -10.97718 -10.32359 -9.79599 -9.42767 -8.88385 -6.57152 -0.46175 0.65291 0.89967 1.42074 1.46950 1.58087 2.10981 2.14548 2.31159 2.71436 3.05968 3.24414 3.47169 4.00897 4.41772 4.42902 4.65232 4.73465 4.79214 4.86037 5.16046 5.44503 5.54360 5.98299 6.13797 6.27533 6.31869 6.57611 7.21422 7.39001 8.10362 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040694 B = 0.008702 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.891717 B = 3216.862043 C = 3889.599485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.307 6.307 3 C 0.466 3.534 4 N -0.620 5.620 5 C 0.321 3.679 6 C -0.071 4.071 7 N -0.425 5.425 8 C -0.044 4.044 9 C 0.206 3.794 10 C -0.434 4.434 11 H 0.079 0.921 12 C 0.043 3.957 13 N -0.797 5.797 14 Si 1.014 2.986 15 H -0.257 1.257 16 H -0.251 1.251 17 H -0.266 1.266 18 N -0.335 5.335 19 N -0.375 5.375 20 H 0.063 0.937 21 H 0.137 0.863 22 H 0.063 0.937 23 H 0.224 0.776 24 H 0.215 0.785 25 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -2.492 -0.011 5.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.208 6.208 3 C 0.153 3.847 4 N -0.352 5.352 5 C 0.141 3.859 6 C -0.301 4.301 7 N -0.147 5.147 8 C -0.214 4.214 9 C 0.087 3.913 10 C -0.470 4.470 11 H 0.097 0.903 12 C -0.177 4.177 13 N -0.423 5.423 14 Si 0.832 3.168 15 H -0.181 1.181 16 H -0.174 1.174 17 H -0.190 1.190 18 N -0.120 5.120 19 N -0.210 5.210 20 H 0.082 0.918 21 H 0.154 0.846 22 H 0.082 0.918 23 H 0.240 0.760 24 H 0.231 0.769 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.163 -2.832 -0.004 5.888 hybrid contribution 0.786 -0.492 0.003 0.927 sum -4.377 -3.324 -0.001 5.496 Atomic orbital electron populations 1.23273 0.73477 1.05371 1.03020 1.86066 1.25614 1.20929 1.88216 1.21293 0.86560 0.86455 0.90442 1.68056 1.38680 0.97810 1.30690 1.22920 0.87421 0.95623 0.79946 1.21614 0.96231 0.84142 1.28068 1.69699 1.02727 1.28470 1.13802 1.24368 0.93960 0.91281 1.11751 1.19570 0.79731 0.94770 0.97239 1.19011 0.89542 0.94727 1.43768 0.90295 1.26880 1.02805 0.97460 0.90569 1.69410 1.28164 1.12854 1.31830 0.84721 0.74455 0.77660 0.79984 1.18110 1.17400 1.18973 1.45723 1.06570 1.01288 1.58422 1.75298 1.08075 1.04685 1.32981 0.91801 0.84553 0.91794 0.75958 0.76933 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.36 113.37 1.17 2.26 15 2 O -0.31 -11.80 10.56 -89.02 -0.94 -12.74 15 3 C 0.47 21.27 8.58 180.52 1.55 22.82 15 4 N -0.62 -25.12 9.18 -311.76 -2.86 -27.99 15 5 C 0.32 12.89 11.33 85.27 0.97 13.86 15 6 C -0.07 -3.57 7.89 133.72 1.05 -2.52 15 7 N -0.43 -21.84 11.22 -191.13 -2.14 -23.99 15 8 C -0.04 -2.35 10.85 85.26 0.92 -1.42 15 9 C 0.21 11.62 6.94 39.20 0.27 11.89 15 10 C -0.43 -23.20 9.44 23.09 0.22 -22.98 15 11 H 0.08 4.29 7.85 -2.91 -0.02 4.27 15 12 C 0.04 1.97 5.50 85.28 0.47 2.44 15 13 N -0.80 -36.25 10.31 21.86 0.23 -36.03 15 14 Si 1.01 34.77 29.56 68.60 2.03 36.80 15 15 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 16 H -0.25 -7.72 7.11 99.48 0.71 -7.02 15 17 H -0.27 -9.37 7.11 99.48 0.71 -8.67 15 18 N -0.34 -18.64 4.11 -185.11 -0.76 -19.40 15 19 N -0.38 -20.13 12.04 -174.99 -2.11 -22.24 15 20 H 0.06 1.55 8.09 -2.39 -0.02 1.53 15 21 H 0.14 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.06 1.55 8.09 -2.39 -0.02 1.53 15 23 H 0.22 6.42 8.06 -2.91 -0.02 6.40 15 24 H 0.21 10.97 5.74 -2.91 -0.02 10.95 15 25 H 0.31 12.06 8.30 -92.71 -0.77 11.29 15 Total: -1.00 -65.76 233.46 1.30 -64.46 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.23 Total: 14.78 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 6.63 Total: 26.34 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -7.65 Total: -129.64 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.94 Total: -12.74 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -65.76 1.30 -64.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207043.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.498 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds