Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48499 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47201 * 300.00078 * 3 2 1 6 6 H 1.48499 * 109.47150 * 60.00014 * 3 2 1 7 7 C 1.37879 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47235 * 180.02562 * 9 7 2 11 11 N 1.30873 * 125.38209 * 89.97190 * 10 9 7 12 12 C 1.33427 * 109.92028 * 180.02562 * 11 10 9 13 13 C 1.37989 * 107.59469 * 0.02562 * 12 11 10 14 14 C 1.40983 * 133.68098 * 179.97438 * 13 12 11 15 15 C 1.35919 * 119.21649 * 179.97438 * 14 13 12 16 16 C 1.40695 * 119.78854 * 0.02562 * 15 14 13 17 17 C 1.35067 * 120.57430 * 0.02562 * 16 15 14 18 18 F 1.35105 * 119.74465 * 179.97438 * 17 16 15 19 19 N 1.35711 * 125.38050 * 270.00062 * 10 9 7 20 20 H 0.96995 * 119.99860 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46521 * 60.00126 * 9 7 2 22 22 H 1.08996 * 109.46783 * 300.00262 * 9 7 2 23 23 H 1.07996 * 126.20415 * 179.97438 * 12 11 10 24 24 H 1.08003 * 120.39849 * 359.97438 * 14 13 12 25 25 H 1.08001 * 120.11206 * 179.97438 * 15 14 13 26 26 H 1.08003 * 119.71257 * 179.71660 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 7 2.7230 -4.2204 1.0665 12 6 3.5589 -5.1976 0.7108 13 6 3.5925 -5.2364 -0.6682 14 6 4.2788 -6.0378 -1.6032 15 6 4.0898 -5.8175 -2.9311 16 6 3.2171 -4.7979 -3.3531 17 6 2.5646 -4.0345 -2.4499 18 9 1.7308 -3.0596 -2.8738 19 7 2.7408 -4.2420 -1.1070 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 4.1101 -5.8409 1.3806 24 1 4.9469 -6.8177 -1.2685 25 1 4.6086 -6.4226 -3.6599 26 1 3.0713 -4.6209 -4.4085 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211717.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = 18.536788 kcal Electronic energy + Delta-G solvation = -14370.637521 eV Core-core repulsion = 11750.231828 eV Total energy + Delta-G solvation = -2620.405693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.25635 -43.60790 -38.28283 -35.52085 -34.17786 -32.25524 -31.08615 -28.12491 -25.41732 -24.73705 -23.42335 -21.91289 -18.95657 -18.65919 -18.39173 -17.57920 -17.15273 -16.59023 -16.21105 -15.83851 -15.59659 -14.70363 -14.50726 -14.27123 -13.68967 -13.11648 -13.01745 -12.83830 -12.62992 -12.57126 -12.07606 -11.74658 -11.51695 -11.22175 -10.70900 -10.23797 -8.45764 -8.15076 -6.45018 -0.25703 0.25102 1.32824 1.35141 1.35774 1.48427 2.01485 2.35942 2.43713 2.99613 3.09395 3.59688 3.68338 3.84939 3.95001 4.16919 4.54586 4.75119 4.89206 5.02846 5.05958 5.19786 5.27557 5.57042 5.63288 5.75915 5.91445 6.09395 6.60528 7.00400 7.23273 8.79968 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.009429 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.176709 B = 2968.888239 C = 3301.873921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.042 0.958 9 C 0.108 3.892 10 C 0.181 3.819 11 N -0.488 5.488 12 C -0.035 4.035 13 C -0.014 4.014 14 C -0.070 4.070 15 C -0.106 4.106 16 C -0.135 4.135 17 C 0.211 3.789 18 F -0.124 7.124 19 N -0.400 5.400 20 H 0.270 0.730 21 H 0.018 0.982 22 H 0.022 0.978 23 H 0.218 0.782 24 H 0.195 0.805 25 H 0.197 0.803 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -12.583 -8.300 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.061 0.939 9 C 0.069 3.931 10 C -0.074 4.074 11 N -0.202 5.202 12 C -0.188 4.188 13 C -0.120 4.120 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.157 4.157 17 C 0.093 3.907 18 F -0.103 7.103 19 N -0.078 5.078 20 H 0.079 0.921 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.234 0.766 24 H 0.212 0.788 25 H 0.214 0.786 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.259 -12.107 -7.509 16.991 hybrid contribution -0.270 1.249 -0.454 1.356 sum 8.989 -10.858 -7.963 16.190 Atomic orbital electron populations 1.70058 1.07544 1.28371 1.50229 1.25883 0.95880 1.03030 0.93897 0.85308 0.78453 0.78241 0.78500 1.19562 1.19375 1.19473 1.21094 0.92395 0.90977 1.52557 0.93937 1.17488 0.90838 0.87687 0.97076 1.24077 1.03534 1.00268 0.79563 1.69961 1.12338 1.09764 1.28170 1.23300 1.03257 1.00776 0.91461 1.20327 1.00053 0.95334 0.96336 1.21116 0.98246 0.98312 0.91225 1.21395 0.97653 0.97021 0.96479 1.21230 0.98025 0.96400 1.00027 1.18100 0.97754 0.92765 0.82068 1.91638 1.69670 1.60966 1.87982 1.43569 1.32519 1.26395 1.05296 0.92069 0.96370 0.95989 0.76562 0.78796 0.78641 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.04 13.29 21.45 0.28 -56.75 15 2 C 0.01 0.74 5.46 84.66 0.46 1.20 15 3 Si 0.97 46.09 29.54 68.60 2.03 48.12 15 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.53 -32.71 9.09 25.60 0.23 -32.47 15 8 H 0.04 2.65 7.74 -2.91 -0.02 2.63 15 9 C 0.11 6.37 5.17 29.10 0.15 6.52 15 10 C 0.18 9.34 7.18 137.81 0.99 10.33 15 11 N -0.49 -23.67 11.19 -185.44 -2.08 -25.74 15 12 C -0.03 -1.27 12.01 84.39 1.01 -0.25 15 13 C -0.01 -0.49 6.80 38.77 0.26 -0.22 15 14 C -0.07 -1.46 10.11 22.40 0.23 -1.23 15 15 C -0.11 -1.85 10.06 22.33 0.22 -1.63 15 16 C -0.13 -3.29 9.93 22.14 0.22 -3.07 15 17 C 0.21 7.98 8.24 83.15 0.69 8.66 15 18 F -0.12 -5.42 15.64 44.97 0.70 -4.72 15 19 N -0.40 -17.22 2.96 -338.71 -1.00 -18.22 15 20 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 21 H 0.02 1.11 6.91 -2.39 -0.02 1.10 15 22 H 0.02 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.22 5.63 8.06 -2.91 -0.02 5.60 15 24 H 0.19 2.15 8.06 -2.91 -0.02 2.13 15 25 H 0.20 1.36 8.06 -2.91 -0.02 1.33 15 26 H 0.19 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -78.01 241.34 5.60 -72.41 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: 1.20 Total: -2.94 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.47 Total: -12.15 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -2.79 Total: -100.72 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.70 Total: -4.72 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.01 5.60 -72.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211717.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.947 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds