Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32104 * 125.93739 * 2 1 4 4 C 1.33433 * 109.91240 * 179.97438 * 3 2 1 5 5 C 1.39483 * 125.65604 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00504 * 173.93757 * 5 4 3 7 7 C 1.39872 * 119.99966 * 353.92759 * 5 4 3 8 8 N 1.30976 * 119.99998 * 6.01598 * 7 5 4 9 9 Si 1.86796 * 120.00013 * 186.01183 * 7 5 4 10 10 H 1.48508 * 109.47013 * 94.98411 * 9 7 5 11 11 H 1.48499 * 109.47354 * 214.98591 * 9 7 5 12 12 H 1.48505 * 109.47403 * 334.98793 * 9 7 5 13 13 N 1.37875 * 108.69483 * 359.97438 * 4 3 2 14 14 C 1.37886 * 106.63453 * 0.02562 * 13 4 3 15 15 C 1.39926 * 119.98854 * 179.97438 * 14 13 4 16 16 C 1.37900 * 119.18417 * 359.97438 * 15 14 13 17 17 C 1.39961 * 119.55331 * 0.02562 * 16 15 14 18 18 C 1.35926 * 120.34660 * 0.02562 * 17 16 15 19 19 F 1.35096 * 119.69100 * 180.02562 * 18 17 16 20 20 H 1.08994 * 109.47307 * 90.02790 * 1 2 3 21 21 H 1.09004 * 109.46602 * 210.02531 * 1 2 3 22 22 H 1.09000 * 109.47398 * 330.01915 * 1 2 3 23 23 H 0.96994 * 120.00665 * 179.97438 * 8 7 5 24 24 H 1.07997 * 120.40702 * 179.97438 * 15 14 13 25 25 H 1.07995 * 120.22311 * 179.97438 * 16 15 14 26 26 H 1.07996 * 119.82881 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2823 1.0696 0.0000 4 6 3.5648 0.7012 0.0006 5 6 4.6591 1.5661 0.0012 6 1 5.6595 1.1713 0.1004 7 6 4.4610 2.9448 -0.1268 8 7 3.2462 3.4344 -0.1287 9 14 5.9290 4.0877 -0.2948 10 1 6.1902 4.3496 -1.7331 11 1 5.6403 5.3694 0.3973 12 1 7.1236 3.4525 0.3175 13 7 3.6290 -0.6760 0.0015 14 6 2.3277 -1.1318 0.0009 15 6 2.0683 -2.5068 0.0011 16 6 3.1267 -3.3908 0.0014 17 6 4.4370 -2.8989 0.0020 18 6 4.6676 -1.5593 0.0028 19 9 5.9377 -1.0990 0.0029 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3634 0.8901 0.5135 23 1 3.1088 4.3905 -0.2171 24 1 1.0516 -2.8713 0.0011 25 1 2.9457 -4.4555 0.0020 26 1 5.2692 -3.5872 0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224319.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = 32.581931 kcal Electronic energy + Delta-G solvation = -14504.322364 eV Core-core repulsion = 11884.525714 eV Total energy + Delta-G solvation = -2619.796650 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.37871 -40.84634 -36.02464 -33.63864 -32.42741 -29.53398 -28.94583 -27.38878 -24.13277 -22.55891 -21.05699 -19.47443 -17.90451 -16.45794 -16.02961 -15.53701 -15.24169 -14.69730 -14.29563 -13.74997 -13.48513 -12.93170 -12.21956 -12.21329 -11.82910 -11.57019 -11.38065 -11.19965 -11.08077 -10.58636 -10.46149 -10.30265 -9.31467 -9.24324 -8.33647 -7.99768 -6.69965 -6.59004 -4.32727 1.74029 2.32022 3.01949 3.05465 3.09895 3.64345 3.93047 4.17453 4.48650 5.07267 5.29292 5.56026 5.72626 5.88471 5.90130 5.93860 6.35086 6.39070 6.59855 6.79817 6.81981 6.96204 7.06150 7.19457 7.37094 7.86175 7.99067 8.17625 8.64213 8.85903 9.71644 10.21444 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.012050 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.074129 B = 2323.159989 C = 3222.672853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.052 3.948 3 N -0.471 5.471 4 C 0.364 3.636 5 C -0.438 4.438 6 H 0.091 0.909 7 C 0.076 3.924 8 N -0.731 5.731 9 Si 0.921 3.079 10 H -0.268 1.268 11 H -0.274 1.274 12 H -0.260 1.260 13 N -0.448 5.448 14 C -0.118 4.118 15 C -0.037 4.037 16 C -0.195 4.195 17 C -0.195 4.195 18 C 0.280 3.720 19 F -0.124 7.124 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.278 0.722 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -5.714 -0.101 5.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 N -0.189 5.189 4 C 0.130 3.870 5 C -0.477 4.477 6 H 0.109 0.891 7 C -0.150 4.150 8 N -0.354 5.354 9 Si 0.745 3.255 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.184 1.184 13 N -0.133 5.133 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.215 4.215 17 C -0.219 4.219 18 C 0.159 3.841 19 F -0.103 7.103 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.141 0.859 25 H 0.136 0.864 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.649 -4.601 -0.104 4.648 hybrid contribution 1.312 -0.265 -0.095 1.341 sum 0.662 -4.866 -0.200 4.915 Atomic orbital electron populations 1.19906 0.88993 1.01469 1.01114 1.21305 0.95374 0.88137 1.04149 1.71064 0.98418 1.25194 1.24191 1.20371 0.93395 0.75996 0.97242 1.18394 0.92131 0.90573 1.46563 0.89061 1.25801 0.97299 0.98413 0.93446 1.70116 1.21396 1.14223 1.29692 0.86084 0.81077 0.79055 0.79320 1.19295 1.19860 1.18422 1.43163 1.04882 1.07564 1.57684 1.18581 0.83234 0.93867 1.26203 1.20418 0.98455 0.89958 0.96946 1.20405 0.91004 0.98425 1.11681 1.19994 0.98955 0.90192 1.12742 1.17235 0.74163 0.88053 1.04627 1.91523 1.34706 1.90037 1.94028 0.92244 0.92476 0.91577 0.91081 0.85890 0.86403 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.44 36.01 0.38 -0.69 15 2 C 0.05 1.27 7.20 -81.89 -0.59 0.68 15 3 N -0.47 -13.34 9.31 -8.19 -0.08 -13.42 15 4 C 0.36 10.35 7.47 -155.09 -1.16 9.19 15 5 C -0.44 -12.11 9.03 -38.51 -0.35 -12.45 15 6 H 0.09 2.42 6.47 -52.49 -0.34 2.08 15 7 C 0.08 1.96 5.49 -17.31 -0.09 1.86 15 8 N -0.73 -19.69 11.89 55.55 0.66 -19.03 15 9 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 15 10 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 11 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 12 H -0.26 -5.29 7.11 56.52 0.40 -4.88 15 13 N -0.45 -11.61 3.00 -60.59 -0.18 -11.79 15 14 C -0.12 -2.81 6.75 -83.92 -0.57 -3.38 15 15 C -0.04 -0.73 10.14 -39.07 -0.40 -1.12 15 16 C -0.19 -3.52 10.13 -39.06 -0.40 -3.92 15 17 C -0.19 -3.75 9.96 -39.77 -0.40 -4.15 15 18 C 0.28 6.44 8.25 -16.38 -0.14 6.30 15 19 F -0.12 -2.79 15.59 2.25 0.04 -2.75 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 24 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 25 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 26 H 0.13 2.09 8.06 -52.49 -0.42 1.67 15 LS Contribution 238.88 15.07 3.60 3.60 Total: -1.00 -30.54 238.88 -6.70 -37.24 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.01 Total: -0.10 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.70 Total: -7.68 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.40 Total: -44.23 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.54 -6.70 -37.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224319.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.821 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds