Wall clock time and date at job start Mon Mar 30 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00153 * 2 1 4 4 H 1.48494 * 109.47156 * 270.00034 * 3 2 1 5 5 H 1.48494 * 109.47328 * 30.00489 * 3 2 1 6 6 H 1.48503 * 109.46877 * 150.00233 * 3 2 1 7 7 C 1.37878 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99759 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47117 * 180.02562 * 9 7 2 11 11 N 1.30933 * 125.31007 * 269.97243 * 10 9 7 12 12 C 1.33393 * 109.85563 * 180.02562 * 11 10 9 13 13 C 1.37985 * 107.45291 * 359.97438 * 12 11 10 14 14 C 1.41137 * 133.70308 * 180.02562 * 13 12 11 15 15 F 1.35104 * 120.43090 * 359.97438 * 14 13 12 16 16 C 1.36095 * 119.14009 * 179.97438 * 14 13 12 17 17 C 1.40808 * 119.74857 * 359.80232 * 16 14 13 18 18 C 1.34648 * 120.63878 * 0.43852 * 17 16 14 19 19 N 1.35003 * 125.32115 * 89.99538 * 10 9 7 20 20 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46956 * 59.99978 * 9 7 2 22 22 H 1.09003 * 109.47037 * 299.99715 * 9 7 2 23 23 H 1.07997 * 126.26951 * 179.97438 * 12 11 10 24 24 H 1.08001 * 120.12603 * 180.02562 * 16 14 13 25 25 H 1.08001 * 119.67887 * 180.25115 * 17 16 14 26 26 H 1.08002 * 119.70469 * 179.81684 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 -0.0013 11 7 4.2661 -3.3295 1.0664 12 6 4.6951 -4.5412 0.7098 13 6 4.7109 -4.5853 -0.6693 14 6 5.0619 -5.5779 -1.6092 15 9 5.4911 -6.7904 -1.1960 16 6 4.9624 -5.2977 -2.9373 17 6 4.5094 -4.0307 -3.3521 18 6 4.1816 -3.0891 -2.4471 19 7 4.2743 -3.3497 -1.1036 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 4.9782 -5.3410 1.3780 24 1 5.2265 -6.0457 -3.6703 25 1 4.4271 -3.8109 -4.4063 26 1 3.8386 -2.1213 -2.7820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261235268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:32 Heat of formation + Delta-G solvation = 37.625395 kcal Electronic energy + Delta-G solvation = -14123.485538 eV Core-core repulsion = 11503.907588 eV Total energy + Delta-G solvation = -2619.577949 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.88675 -42.33170 -37.04782 -33.56520 -32.52889 -30.94594 -29.65540 -26.98826 -23.57384 -23.10218 -22.00374 -20.30643 -17.51027 -17.16462 -17.03730 -16.02787 -15.91776 -15.44713 -14.79235 -14.32753 -14.03261 -13.57202 -13.10755 -12.35754 -12.13460 -11.94600 -11.74451 -11.58548 -10.77668 -10.69947 -10.25430 -10.03140 -9.74765 -9.55754 -8.86270 -8.72048 -7.02329 -6.19916 -4.22102 0.92100 1.52645 2.93034 3.18818 3.29155 3.30671 3.50609 3.59451 4.25106 4.29069 4.69443 4.84224 5.03485 5.07379 5.15505 5.31283 5.74022 5.89477 6.01480 6.12793 6.19598 6.60337 6.78997 6.85968 7.03426 7.41161 7.61360 8.32537 8.44033 8.82728 9.36672 10.92632 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.045209 B = 0.007994 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.197118 B = 3501.630085 C = 3755.219460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.063 3.937 10 C 0.256 3.744 11 N -0.462 5.462 12 C 0.007 3.993 13 C -0.070 4.070 14 C 0.145 3.855 15 F -0.127 7.127 16 C -0.172 4.172 17 C -0.138 4.138 18 C 0.071 3.929 19 N -0.362 5.362 20 H 0.267 0.733 21 H 0.057 0.943 22 H 0.031 0.969 23 H 0.177 0.823 24 H 0.140 0.860 25 H 0.151 0.849 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 -6.727 -6.841 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.092 0.908 9 C 0.024 3.976 10 C -0.001 4.001 11 N -0.175 5.175 12 C -0.148 4.148 13 C -0.177 4.177 14 C 0.124 3.876 15 F -0.106 7.106 16 C -0.193 4.193 17 C -0.159 4.159 18 C -0.049 4.049 19 N -0.033 5.033 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.194 0.806 24 H 0.158 0.842 25 H 0.169 0.831 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.006 -6.245 -6.006 13.237 hybrid contribution 0.387 0.208 -0.795 0.908 sum 10.393 -6.037 -6.801 13.810 Atomic orbital electron populations 1.69884 1.06270 1.27286 1.49517 1.24921 0.94777 0.98937 0.94113 0.86831 0.80627 0.83571 0.78734 1.19989 1.20822 1.18640 1.20772 0.87489 0.95047 1.52683 0.90774 1.18363 0.97811 0.82599 0.98847 1.24151 1.00278 0.97629 0.78068 1.70156 1.16051 1.03563 1.27707 1.22596 1.05687 0.96628 0.89919 1.19186 1.14674 0.88379 0.95509 1.16357 1.00039 0.80059 0.91147 1.91488 1.87066 1.40686 1.91325 1.20875 1.05827 0.98951 0.93659 1.20427 1.03302 0.92291 0.99878 1.21810 1.00741 1.01898 0.80456 1.42716 1.42970 1.11130 1.06495 0.92282 0.92456 0.95090 0.80554 0.84212 0.83146 0.81186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.74 15 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 15 3 Si 0.88 20.20 27.47 -169.99 -4.67 15.53 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.26 -5.79 6.54 56.52 0.37 -5.42 15 7 C -0.52 -14.43 9.65 -34.44 -0.33 -14.76 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.06 1.47 4.49 -29.04 -0.13 1.34 15 10 C 0.26 5.71 7.15 -155.09 -1.11 4.60 15 11 N -0.46 -10.36 11.20 -10.12 -0.11 -10.47 15 12 C 0.01 0.13 12.02 -16.97 -0.20 -0.07 15 13 C -0.07 -1.30 6.80 -84.05 -0.57 -1.87 15 14 C 0.15 2.27 7.34 -39.25 -0.29 1.98 15 15 F -0.13 -1.87 17.28 2.25 0.04 -1.84 15 16 C -0.17 -2.24 10.05 -39.38 -0.40 -2.64 15 17 C -0.14 -1.75 9.97 -39.88 -0.40 -2.15 15 18 C 0.07 1.12 10.80 -16.43 -0.18 0.94 15 19 N -0.36 -7.05 2.95 -58.10 -0.17 -7.22 15 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.06 1.36 7.20 -51.93 -0.37 0.98 15 22 H 0.03 0.66 7.46 -51.93 -0.39 0.27 15 23 H 0.18 2.75 8.06 -52.49 -0.42 2.33 15 24 H 0.14 1.39 8.06 -52.49 -0.42 0.97 15 25 H 0.15 1.34 8.06 -52.49 -0.42 0.92 15 26 H 0.17 2.43 7.98 -52.49 -0.42 2.01 15 LS Contribution 240.45 15.07 3.62 3.62 Total: -1.00 -31.30 240.45 -6.25 -37.55 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -2.03 Total: -0.82 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.70 Total: -10.62 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.49 Total: -43.43 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.30 -6.25 -37.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.177 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds