Wall clock time and date at job start Mon Mar 30 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36527 * 119.72674 * 2 1 4 4 C 1.40674 * 119.88096 * 180.02562 * 3 2 1 5 5 C 1.41160 * 120.29233 * 180.08901 * 4 3 2 6 6 H 1.07996 * 120.00654 * 204.62752 * 5 4 3 7 7 C 1.39938 * 119.99613 * 24.62662 * 5 4 3 8 8 N 1.30865 * 120.00107 * 17.71780 * 7 5 4 9 9 Si 1.86799 * 120.00085 * 197.71824 * 7 5 4 10 10 H 1.48498 * 109.46715 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46970 * 120.00047 * 9 7 5 12 12 H 1.48499 * 109.47120 * 240.00179 * 9 7 5 13 13 C 1.41390 * 119.42369 * 0.06592 * 4 3 2 14 14 C 1.38246 * 119.55674 * 359.83176 * 13 4 3 15 15 C 1.38467 * 119.95378 * 0.18789 * 14 13 4 16 16 C 1.50799 * 120.38075 * 180.40933 * 14 13 4 17 17 O 1.43093 * 109.28581 * 343.72259 * 16 14 13 18 18 C 1.43271 * 113.01944 * 48.57308 * 17 16 14 19 19 O 1.35639 * 119.72422 * 179.62884 * 13 4 3 20 20 H 1.08999 * 109.47269 * 269.97704 * 1 2 3 21 21 H 1.09006 * 109.46996 * 29.97413 * 1 2 3 22 22 H 1.08998 * 109.47710 * 149.97110 * 1 2 3 23 23 H 1.08002 * 120.05504 * 0.02872 * 3 2 1 24 24 H 0.97000 * 120.00680 * 179.97438 * 8 7 5 25 25 H 1.08003 * 119.68650 * 180.17969 * 15 14 13 26 26 H 1.09004 * 109.49222 * 223.79184 * 16 14 13 27 27 H 1.08995 * 109.55095 * 103.69243 * 16 14 13 28 28 H 1.08994 * 109.61542 * 175.01025 * 18 17 16 29 29 H 1.08997 * 109.76360 * 54.56514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1840 1.1856 0.0000 4 6 3.5907 1.1894 -0.0005 5 6 4.2995 2.4102 0.0013 6 1 5.3057 2.4511 -0.3887 7 6 3.6981 3.5674 0.5087 8 7 2.6477 3.4732 1.2835 9 14 4.3948 5.2468 0.0799 10 1 5.5759 5.0814 -0.8049 11 1 3.3592 6.0481 -0.6206 12 1 4.8035 5.9457 1.3247 13 6 4.2886 -0.0403 -0.0025 14 6 3.5794 -1.2269 -0.0003 15 6 2.1949 -1.2049 -0.0002 16 6 4.3048 -2.5490 0.0069 17 8 5.6700 -2.3410 -0.3681 18 6 6.2910 -1.2680 0.3500 19 8 5.6450 -0.0437 -0.0107 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8903 -0.5135 22 1 -0.3634 -0.8897 -0.5143 23 1 1.6404 2.1189 0.0005 24 1 2.2311 4.2754 1.6355 25 1 1.6452 -2.1345 0.0045 26 1 3.8318 -3.2273 -0.7032 27 1 4.2639 -2.9819 1.0064 28 1 7.3476 -1.2154 0.0876 29 1 6.1882 -1.4340 1.4223 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:02 Heat of formation + Delta-G solvation = -93.355625 kcal Electronic energy + Delta-G solvation = -14857.207435 eV Core-core repulsion = 12323.117277 eV Total energy + Delta-G solvation = -2534.090158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.37764 -38.73317 -37.09519 -35.66711 -33.10219 -32.03477 -28.36040 -27.45008 -26.58815 -25.73928 -22.61742 -20.92714 -19.26761 -18.71713 -17.85241 -17.14489 -16.63993 -16.11144 -15.48205 -15.04977 -14.87437 -14.56962 -14.34479 -14.13420 -13.52470 -13.14694 -13.12966 -12.96912 -12.61185 -12.42295 -12.17567 -11.67396 -11.45923 -11.36866 -11.01206 -10.86898 -9.30893 -8.81054 -8.56726 -6.27151 0.87399 0.94157 1.36705 1.47174 1.52401 2.21413 2.55096 2.73204 2.89929 3.59500 3.90192 4.02527 4.30354 4.39801 4.43873 4.50742 4.65844 4.73838 4.95335 5.06164 5.14157 5.25042 5.35370 5.45524 5.67892 5.83325 5.93338 6.17464 6.27875 6.50727 6.74744 6.88175 7.16180 8.32865 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.011716 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.478454 B = 2389.258486 C = 3340.328219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.102 4.102 3 C -0.169 4.169 4 C 0.065 3.935 5 C -0.485 4.485 6 H 0.066 0.934 7 C 0.035 3.965 8 N -0.824 5.824 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.260 1.260 12 H -0.263 1.263 13 C -0.017 4.017 14 C -0.182 4.182 15 C -0.201 4.201 16 C 0.110 3.890 17 O -0.406 6.406 18 C 0.216 3.784 19 O -0.352 6.352 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.109 0.891 24 H 0.289 0.711 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.159 0.841 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -5.596 -0.238 5.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.189 4.189 4 C 0.062 3.938 5 C -0.514 4.514 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.450 5.450 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.184 1.184 12 H -0.188 1.188 13 C -0.061 4.061 14 C -0.184 4.184 15 C -0.220 4.220 16 C 0.034 3.966 17 O -0.326 6.326 18 C 0.104 3.896 19 O -0.269 6.269 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.127 0.873 24 H 0.099 0.901 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.097 0.903 28 H 0.176 0.824 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.195 -5.427 -0.272 5.437 hybrid contribution 0.196 0.864 0.286 0.931 sum 0.391 -4.563 0.014 4.579 Atomic orbital electron populations 1.20622 0.90323 1.02227 1.01797 1.19697 0.96797 0.93008 1.00688 1.20782 0.92971 0.97247 1.07858 1.17559 0.92652 0.91028 0.92551 1.19553 1.01248 0.93448 1.37166 0.91533 1.26708 0.94587 1.04738 0.91897 1.69877 1.19477 1.32764 1.22923 0.85170 0.79266 0.76102 0.79223 1.18784 1.18428 1.18809 1.18930 0.81497 0.94042 1.11585 1.20266 0.95834 0.94516 1.07753 1.20242 0.91786 0.97204 1.12784 1.21581 0.79909 0.93055 1.02029 1.88111 1.26033 1.52862 1.65635 1.24581 0.95926 0.74197 0.94944 1.86020 1.17973 1.37109 1.85803 0.91672 0.92684 0.90390 0.87317 0.90067 0.85200 0.85752 0.90334 0.82383 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.99 71.24 0.71 -2.57 15 2 C -0.10 -4.64 5.84 -20.14 -0.12 -4.76 15 3 C -0.17 -9.06 8.26 22.46 0.19 -8.88 15 4 C 0.06 3.70 5.58 -21.19 -0.12 3.58 15 5 C -0.48 -27.90 8.71 23.40 0.20 -27.70 15 6 H 0.07 3.88 7.63 -2.91 -0.02 3.86 15 7 C 0.04 1.83 5.14 85.25 0.44 2.27 15 8 N -0.82 -43.86 10.96 21.83 0.24 -43.62 15 9 Si 0.98 39.84 29.60 68.60 2.03 41.87 15 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 11 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 12 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 13 C -0.02 -0.88 6.59 23.05 0.15 -0.73 15 14 C -0.18 -8.22 5.81 -19.78 -0.11 -8.34 15 15 C -0.20 -8.56 9.36 22.45 0.21 -8.35 15 16 C 0.11 3.84 6.88 71.27 0.49 4.33 15 17 O -0.41 -15.02 10.97 -126.14 -1.38 -16.41 15 18 C 0.22 7.89 7.95 113.37 0.90 8.79 15 19 O -0.35 -17.39 9.72 -66.69 -0.65 -18.03 15 20 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.05 1.90 8.07 -2.38 -0.02 1.89 15 22 H 0.08 2.28 8.08 -2.39 -0.02 2.26 15 23 H 0.11 6.05 6.17 -2.91 -0.02 6.03 15 24 H 0.29 13.75 8.30 -92.71 -0.77 12.98 15 25 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 26 H 0.12 3.65 8.14 -2.39 -0.02 3.63 15 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 28 H 0.16 4.48 8.14 -2.39 -0.02 4.46 15 29 H 0.06 1.92 8.13 -2.39 -0.02 1.90 15 Total: -1.00 -65.62 249.68 4.33 -61.29 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.15 Total: 17.26 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 2.94 Total: -42.35 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.24 Total: -43.62 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -2.03 Total: -34.44 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -65.62 4.33 -61.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.062 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds