Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31891 * 118.89582 * 2 1 4 4 C 1.32562 * 121.11169 * 180.02562 * 3 2 1 5 5 C 1.38492 * 118.69787 * 359.97438 * 4 3 2 6 6 N 1.39063 * 134.57493 * 179.97438 * 5 4 3 7 7 H 0.97002 * 125.92109 * 0.02562 * 6 5 4 8 8 C 1.34749 * 108.15237 * 179.97438 * 6 5 4 9 9 O 1.21630 * 125.15208 * 180.02562 * 8 6 5 10 10 N 1.34681 * 109.69442 * 0.04694 * 8 6 5 11 11 C 1.37380 * 125.71341 * 179.97438 * 10 8 6 12 12 H 1.08003 * 119.99780 * 332.75124 * 11 10 8 13 13 C 1.38855 * 120.00108 * 152.74597 * 11 10 8 14 14 N 1.31420 * 120.00140 * 342.11862 * 13 11 10 15 15 Si 1.86810 * 119.99799 * 162.11159 * 13 11 10 16 16 H 1.48501 * 109.46452 * 90.00651 * 15 13 11 17 17 H 1.48498 * 109.46982 * 210.00429 * 15 13 11 18 18 H 1.48494 * 109.47149 * 330.00501 * 15 13 11 19 19 C 1.38354 * 108.57085 * 359.97277 * 10 8 6 20 20 N 1.31817 * 118.89952 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.47013 * 270.02675 * 1 2 3 22 22 H 1.09002 * 109.47573 * 30.02613 * 1 2 3 23 23 H 1.08998 * 109.47352 * 150.03127 * 1 2 3 24 24 H 1.07998 * 120.65169 * 179.97438 * 4 3 2 25 25 H 0.97005 * 120.00053 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1443 1.1547 0.0000 4 6 3.4689 1.2060 -0.0005 5 6 4.1804 0.0178 -0.0005 6 7 5.5317 -0.3107 -0.0014 7 1 6.2702 0.3183 -0.0019 8 6 5.6372 -1.6540 -0.0003 9 8 6.6835 -2.2743 -0.0002 10 7 4.4086 -2.2058 0.0003 11 6 4.1341 -3.5519 0.0009 12 1 4.8408 -4.2473 -0.4272 13 6 2.9480 -4.0183 0.5520 14 7 2.2593 -3.2555 1.3711 15 14 2.3312 -5.7301 0.1290 16 1 2.8786 -6.7082 1.1031 17 1 0.8475 -5.7502 0.1880 18 1 2.7771 -6.0926 -1.2403 19 6 3.4694 -1.1899 0.0001 20 7 2.1440 -1.1540 0.0005 21 1 -0.3633 0.0005 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5133 24 1 3.9832 2.1556 -0.0009 25 1 1.4305 -3.5812 1.7559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261915.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = 35.298887 kcal Electronic energy + Delta-G solvation = -14793.096166 eV Core-core repulsion = 12193.337294 eV Total energy + Delta-G solvation = -2599.758872 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.52126 -40.59060 -37.51929 -36.58639 -34.13673 -33.35308 -32.29285 -28.26307 -27.85277 -24.82510 -23.55174 -22.83773 -20.22658 -19.00979 -18.56129 -17.60875 -17.49587 -16.83578 -16.24565 -15.85934 -15.52510 -14.95196 -13.99962 -13.78895 -13.52995 -13.21629 -13.04408 -12.92224 -12.37781 -12.26154 -12.15913 -12.08192 -11.52359 -11.15025 -10.18954 -9.73286 -9.07921 -8.50374 -6.33763 0.22124 0.30553 1.35628 1.42318 1.51503 1.69715 2.01790 2.28161 2.47477 2.91754 3.13814 3.36578 3.55592 3.69416 4.29644 4.35114 4.74057 4.88424 4.98529 5.09674 5.28400 5.56116 5.79019 5.84897 6.18652 6.43713 6.70297 7.01429 7.45978 7.64748 8.52229 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.015551 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.552318 B = 1800.072915 C = 2859.917691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.289 3.711 3 N -0.533 5.533 4 C 0.178 3.822 5 C -0.067 4.067 6 N -0.606 5.606 7 H 0.444 0.556 8 C 0.626 3.374 9 O -0.613 6.613 10 N -0.356 5.356 11 C -0.391 4.391 12 H 0.096 0.904 13 C 0.021 3.979 14 N -0.826 5.826 15 Si 1.003 2.997 16 H -0.267 1.267 17 H -0.264 1.264 18 H -0.265 1.265 19 C 0.317 3.683 20 N -0.481 5.481 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.214 0.786 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 7.824 -2.006 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 N -0.251 5.251 4 C 0.008 3.992 5 C -0.177 4.177 6 N -0.253 5.253 7 H 0.289 0.711 8 C 0.328 3.672 9 O -0.495 6.495 10 N -0.062 5.062 11 C -0.517 4.517 12 H 0.113 0.887 13 C -0.191 4.191 14 N -0.455 5.455 15 Si 0.824 3.176 16 H -0.192 1.192 17 H -0.189 1.189 18 H -0.190 1.190 19 C 0.072 3.928 20 N -0.202 5.202 21 H 0.105 0.895 22 H 0.122 0.878 23 H 0.094 0.906 24 H 0.230 0.770 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.687 7.148 -1.860 8.748 hybrid contribution 1.320 -0.757 0.133 1.528 sum -3.367 6.391 -1.727 7.427 Atomic orbital electron populations 1.20455 0.83696 1.04157 1.04017 1.23697 0.99248 0.82205 0.92951 1.68350 1.08325 1.29161 1.19282 1.22686 0.88580 0.95560 0.92370 1.19834 0.85183 0.97690 1.15015 1.42394 1.06227 1.06140 1.70494 0.71130 1.16339 0.84055 0.82298 0.84533 1.90836 1.29728 1.65912 1.62995 1.41012 1.02993 1.06285 1.55923 1.19662 1.08295 0.79470 1.44238 0.88651 1.26260 0.95617 1.04132 0.93053 1.69950 1.14466 1.38789 1.22286 0.84838 0.77938 0.75724 0.79138 1.19248 1.18860 1.18974 1.18670 0.89336 0.86183 0.98598 1.67335 1.06603 1.30545 1.15693 0.89510 0.87794 0.90585 0.76955 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 10.31 71.23 0.73 -1.15 15 2 C 0.29 11.30 7.64 138.71 1.06 12.36 15 3 N -0.53 -18.58 10.32 -187.70 -1.94 -20.51 15 4 C 0.18 5.68 11.34 84.64 0.96 6.64 15 5 C -0.07 -2.69 7.33 38.52 0.28 -2.41 15 6 N -0.61 -23.77 6.16 -317.22 -1.95 -25.73 15 7 H 0.44 12.94 8.96 -92.71 -0.83 12.11 15 8 C 0.63 32.41 8.77 179.09 1.57 33.98 15 9 O -0.61 -34.83 17.79 -4.13 -0.07 -34.90 15 10 N -0.36 -19.83 2.85 -479.69 -1.37 -21.20 15 11 C -0.39 -22.59 9.77 83.97 0.82 -21.77 15 12 H 0.10 5.58 7.89 -2.91 -0.02 5.55 15 13 C 0.02 1.11 5.16 84.90 0.44 1.55 15 14 N -0.83 -44.94 10.74 21.64 0.23 -44.71 15 15 Si 1.00 41.71 29.59 68.60 2.03 43.74 15 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 19 C 0.32 15.97 6.97 133.48 0.93 16.90 15 20 N -0.48 -23.19 8.11 -185.33 -1.50 -24.69 15 21 H 0.09 2.34 8.14 -2.38 -0.02 2.32 15 22 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.21 4.28 8.06 -2.91 -0.02 4.26 15 25 H 0.28 14.19 8.31 -92.70 -0.77 13.42 15 Total: -1.00 -72.15 231.80 2.64 -69.51 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.41 Total: 12.39 kcal Atomic # 6 Polarization: 39.30 SS G_CDS: 6.79 Total: 46.10 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -6.53 Total: -136.84 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.07 Total: -34.90 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -72.15 2.64 -69.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261915.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.814 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds