Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.62415 * 2 1 4 4 C 1.50698 * 109.47126 * 182.14227 * 3 2 1 5 5 H 1.08005 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99736 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99999 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47298 * 59.99479 * 8 6 4 10 10 H 1.48502 * 109.46683 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46861 * 299.99424 * 8 6 4 12 12 O 1.43989 * 110.56885 * 237.16726 * 2 1 3 13 13 C 1.36502 * 105.47964 * 268.55150 * 12 2 1 14 14 C 1.38547 * 131.52962 * 162.72100 * 13 12 2 15 15 C 1.38242 * 120.02843 * 179.97438 * 14 13 12 16 16 C 1.38255 * 120.14112 * 0.02562 * 15 14 13 17 17 C 1.38236 * 120.14403 * 0.02562 * 16 15 14 18 18 C 1.38545 * 120.03056 * 359.95008 * 17 16 15 19 19 O 1.36496 * 131.53312 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.47017 * 297.85542 * 1 2 3 21 21 H 1.09001 * 109.47792 * 57.85673 * 1 2 3 22 22 H 1.09001 * 109.47503 * 177.85977 * 1 2 3 23 23 H 1.08997 * 109.47755 * 302.14386 * 3 2 1 24 24 H 1.09010 * 109.47165 * 62.14609 * 3 2 1 25 25 H 0.96995 * 119.99642 * 180.02562 * 7 6 4 26 26 H 1.07996 * 119.99021 * 0.02562 * 14 13 12 27 27 H 1.08003 * 119.92595 * 180.29758 * 15 14 13 28 28 H 1.08004 * 119.92416 * 179.97438 * 16 15 14 29 29 H 1.07998 * 119.98016 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0689 1.4319 0.0000 4 6 3.5747 1.4020 -0.0531 5 1 4.0952 0.4561 -0.0842 6 6 4.2879 2.5819 -0.0620 7 7 3.6540 3.7337 -0.0246 8 14 6.1544 2.5447 -0.1286 9 1 6.5918 1.8516 -1.3669 10 1 6.6775 3.9345 -0.1272 11 1 6.6775 1.8182 1.0564 12 8 2.0359 -0.7309 -1.1327 13 6 2.1950 -2.0145 -0.6965 14 6 2.3428 -3.2073 -1.3857 15 6 2.4905 -4.3937 -0.6916 16 6 2.4905 -4.3937 0.6909 17 6 2.3424 -3.2075 1.3851 18 6 2.1945 -2.0147 0.6961 19 8 2.0350 -0.7312 1.1325 20 1 -0.3633 0.4802 0.9086 21 1 -0.3635 0.5467 -0.8701 22 1 -0.3634 -1.0269 -0.0384 23 1 1.6852 1.9647 -0.8701 24 1 1.7475 1.9412 0.9087 25 1 4.1558 4.5637 -0.0313 26 1 2.3436 -3.2102 -2.4657 27 1 2.6104 -5.3219 -1.2306 28 1 2.6057 -5.3227 1.2297 29 1 2.3425 -3.2107 2.4651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270322.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -43.962665 kcal Electronic energy + Delta-G solvation = -14868.663866 eV Core-core repulsion = 12336.715548 eV Total energy + Delta-G solvation = -2531.948319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60985 -37.49167 -35.44097 -33.36613 -31.44676 -30.23687 -28.46169 -27.71522 -23.42860 -22.36166 -22.31463 -20.67675 -17.64762 -17.05752 -16.60779 -15.55361 -15.23803 -14.38772 -14.15770 -13.72904 -13.39948 -13.23528 -12.38616 -12.25321 -11.99337 -11.98483 -11.84244 -11.75985 -11.31239 -10.94153 -10.66790 -10.66151 -10.41718 -9.60126 -9.24791 -8.51087 -8.42263 -7.45314 -6.04892 -4.05198 1.57614 1.59169 3.35590 3.38097 3.43043 3.47921 3.99044 4.11721 4.45267 4.94459 5.17163 5.27573 5.32013 5.44250 5.45070 5.51572 5.75506 5.93227 5.97696 6.22652 6.34413 6.54659 6.56556 6.64665 6.80802 6.83003 7.35437 7.36089 7.91280 7.92094 8.25036 8.96088 9.57389 11.06879 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.033551 B = 0.009394 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.343235 B = 2980.028598 C = 3377.183533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.263 3.737 3 C 0.029 3.971 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.058 3.942 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 O -0.284 6.284 13 C 0.041 3.959 14 C -0.116 4.116 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.116 4.116 18 C 0.041 3.959 19 O -0.285 6.285 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.263 0.737 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -12.958 0.063 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.190 3.810 3 C -0.008 4.008 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 O -0.199 6.199 13 C -0.005 4.005 14 C -0.135 4.135 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.135 4.135 18 C -0.005 4.005 19 O -0.201 6.201 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.735 -12.502 0.064 13.368 hybrid contribution 0.989 0.199 -0.034 1.009 sum -3.747 -12.303 0.030 12.861 Atomic orbital electron populations 1.22585 0.94762 1.02479 1.04137 1.25083 0.91358 0.94295 0.70276 1.19406 0.97626 0.84200 0.99520 1.20917 0.90462 0.92772 1.50409 0.92379 1.24942 0.98836 0.95331 0.95169 1.69928 1.35740 0.97275 1.50857 0.86566 0.85289 0.76897 0.78796 1.20143 1.21187 1.20158 1.87549 1.80632 1.15289 1.36452 1.20088 1.01312 0.87006 0.92082 1.20012 1.04785 0.88644 1.00064 1.20746 1.02394 0.96904 0.94120 1.20743 1.02423 0.96897 0.94120 1.20008 1.04775 0.88647 1.00056 1.20078 1.01361 0.86971 0.92086 1.87529 1.80707 1.15365 1.36484 0.90036 0.89993 0.92626 0.93429 0.93406 0.92774 0.85429 0.85381 0.85383 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 9.20 37.16 0.34 -2.90 15 2 C 0.26 5.94 1.19 -26.73 -0.03 5.91 15 3 C 0.03 0.77 4.64 -27.88 -0.13 0.64 15 4 C -0.51 -14.86 8.43 -34.44 -0.29 -15.15 15 5 H 0.06 1.75 7.54 -52.48 -0.40 1.35 15 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 7 N -0.90 -26.90 13.29 55.43 0.74 -26.17 15 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 15 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 12 O -0.28 -6.54 10.22 -45.70 -0.47 -7.01 15 13 C 0.04 0.82 6.95 -39.09 -0.27 0.55 15 14 C -0.12 -1.87 10.06 -39.47 -0.40 -2.26 15 15 C -0.12 -1.63 10.04 -39.57 -0.40 -2.03 15 16 C -0.12 -1.63 10.04 -39.58 -0.40 -2.03 15 17 C -0.12 -1.86 10.06 -39.47 -0.40 -2.26 15 18 C 0.04 0.82 6.98 -39.09 -0.27 0.55 15 19 O -0.29 -6.56 10.43 -45.68 -0.48 -7.04 15 20 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 21 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 22 H 0.05 0.91 7.94 -51.93 -0.41 0.50 15 23 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.05 1.29 8.14 -51.92 -0.42 0.87 15 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 26 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 27 H 0.13 1.25 8.06 -52.48 -0.42 0.83 15 28 H 0.13 1.25 8.06 -52.48 -0.42 0.82 15 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 256.43 15.07 3.86 3.86 Total: -1.00 -31.84 256.43 -7.03 -38.87 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.33 Total: -2.55 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.34 Total: -17.39 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.94 Total: -14.04 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.84 -7.03 -38.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270322.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.094 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds