Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.62415 * 2 1 4 4 C 1.50698 * 109.47126 * 182.14227 * 3 2 1 5 5 H 1.08005 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99736 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99999 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47298 * 59.99479 * 8 6 4 10 10 H 1.48502 * 109.46683 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46861 * 299.99424 * 8 6 4 12 12 O 1.43989 * 110.56885 * 237.16726 * 2 1 3 13 13 C 1.36502 * 105.47964 * 268.55150 * 12 2 1 14 14 C 1.38547 * 131.52962 * 162.72100 * 13 12 2 15 15 C 1.38242 * 120.02843 * 179.97438 * 14 13 12 16 16 C 1.38255 * 120.14112 * 0.02562 * 15 14 13 17 17 C 1.38236 * 120.14403 * 0.02562 * 16 15 14 18 18 C 1.38545 * 120.03056 * 359.95008 * 17 16 15 19 19 O 1.36496 * 131.53312 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.47017 * 297.85542 * 1 2 3 21 21 H 1.09001 * 109.47792 * 57.85673 * 1 2 3 22 22 H 1.09001 * 109.47503 * 177.85977 * 1 2 3 23 23 H 1.08997 * 109.47755 * 302.14386 * 3 2 1 24 24 H 1.09010 * 109.47165 * 62.14609 * 3 2 1 25 25 H 0.96995 * 119.99642 * 180.02562 * 7 6 4 26 26 H 1.07996 * 119.99021 * 0.02562 * 14 13 12 27 27 H 1.08003 * 119.92595 * 180.29758 * 15 14 13 28 28 H 1.08004 * 119.92416 * 179.97438 * 16 15 14 29 29 H 1.07998 * 119.98016 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0689 1.4319 0.0000 4 6 3.5747 1.4020 -0.0531 5 1 4.0952 0.4561 -0.0842 6 6 4.2879 2.5819 -0.0620 7 7 3.6540 3.7337 -0.0246 8 14 6.1544 2.5447 -0.1286 9 1 6.5918 1.8516 -1.3669 10 1 6.6775 3.9345 -0.1272 11 1 6.6775 1.8182 1.0564 12 8 2.0359 -0.7309 -1.1327 13 6 2.1950 -2.0145 -0.6965 14 6 2.3428 -3.2073 -1.3857 15 6 2.4905 -4.3937 -0.6916 16 6 2.4905 -4.3937 0.6909 17 6 2.3424 -3.2075 1.3851 18 6 2.1945 -2.0147 0.6961 19 8 2.0350 -0.7312 1.1325 20 1 -0.3633 0.4802 0.9086 21 1 -0.3635 0.5467 -0.8701 22 1 -0.3634 -1.0269 -0.0384 23 1 1.6852 1.9647 -0.8701 24 1 1.7475 1.9412 0.9087 25 1 4.1558 4.5637 -0.0313 26 1 2.3436 -3.2102 -2.4657 27 1 2.6104 -5.3219 -1.2306 28 1 2.6057 -5.3227 1.2297 29 1 2.3425 -3.2107 2.4651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270322.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -63.970312 kcal Electronic energy + Delta-G solvation = -14869.531463 eV Core-core repulsion = 12336.715548 eV Total energy + Delta-G solvation = -2532.815916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.10248 -38.77183 -37.01951 -35.45369 -33.23485 -31.46806 -29.78996 -29.65757 -25.46507 -23.67563 -23.63710 -22.40117 -19.02396 -18.72422 -18.40345 -17.21641 -16.97399 -16.09772 -15.55856 -15.25563 -14.75409 -14.62567 -14.03893 -13.99189 -13.86841 -13.46610 -13.41917 -13.26122 -12.93712 -12.67158 -12.64852 -12.19173 -11.91882 -11.64553 -11.21622 -10.67297 -9.75010 -8.86854 -8.28633 -6.36979 0.33024 0.34462 1.33152 1.36558 1.44979 2.02975 2.35169 2.60699 2.75660 3.05948 3.67950 3.73243 3.84020 4.18779 4.21631 4.42654 4.49923 4.56265 4.61557 4.77237 4.91444 5.17095 5.17881 5.25743 5.34931 5.48572 5.49785 5.64604 5.76771 6.06758 6.40876 6.68627 7.29054 8.83206 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.033551 B = 0.009394 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.343235 B = 2980.028598 C = 3377.183533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.262 3.738 3 C 0.031 3.969 4 C -0.527 4.527 5 H 0.041 0.959 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.272 1.272 12 O -0.315 6.315 13 C -0.002 4.002 14 C -0.119 4.119 15 C -0.106 4.106 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.001 4.001 19 O -0.316 6.316 20 H 0.091 0.909 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.268 0.732 26 H 0.144 0.856 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -15.908 0.038 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.188 3.812 3 C -0.006 4.006 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.197 1.197 12 O -0.232 6.232 13 C -0.046 4.046 14 C -0.137 4.137 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.137 4.137 18 C -0.046 4.046 19 O -0.233 6.233 20 H 0.110 0.890 21 H 0.109 0.891 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.161 0.839 27 H 0.193 0.807 28 H 0.194 0.806 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.104 -15.472 0.040 16.007 hybrid contribution 0.800 0.936 -0.024 1.231 sum -3.303 -14.537 0.015 14.908 Atomic orbital electron populations 1.22471 0.91431 1.03742 1.05048 1.24837 0.93472 0.92194 0.70676 1.19197 0.96439 0.87278 0.97683 1.21120 0.92148 0.92314 1.50913 0.94047 1.25806 1.03831 0.94867 0.94566 1.70025 1.37611 0.97835 1.51194 0.85552 0.79331 0.77609 0.78902 1.19623 1.19633 1.19678 1.87433 1.81789 1.17302 1.36691 1.20563 1.04436 0.86853 0.92769 1.20497 1.03799 0.88228 1.01213 1.21355 0.99234 0.97350 0.94441 1.21354 0.99249 0.97360 0.94430 1.20495 1.03763 0.88216 1.01223 1.20553 1.04475 0.86826 0.92756 1.87415 1.81854 1.17366 1.36704 0.89046 0.89089 0.91060 0.95166 0.95255 0.92340 0.83856 0.80655 0.80644 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.20 9.20 71.98 0.66 -5.53 15 2 C 0.26 12.37 1.19 30.59 0.04 12.40 15 3 C 0.03 1.72 4.64 29.85 0.14 1.86 15 4 C -0.53 -32.23 8.43 25.60 0.22 -32.02 15 5 H 0.04 2.61 7.54 -2.91 -0.02 2.59 15 6 C 0.01 0.45 5.46 84.66 0.46 0.92 15 7 N -0.93 -56.90 13.29 21.45 0.28 -56.62 15 8 Si 0.96 46.69 29.54 68.60 2.03 48.72 15 9 H -0.27 -12.86 7.11 99.48 0.71 -12.15 15 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 11 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 12 O -0.32 -15.17 10.22 -76.08 -0.78 -15.95 15 13 C 0.00 -0.06 6.95 22.59 0.16 0.09 15 14 C -0.12 -3.56 10.06 22.34 0.22 -3.34 15 15 C -0.11 -2.30 10.04 22.27 0.22 -2.07 15 16 C -0.11 -2.30 10.04 22.27 0.22 -2.07 15 17 C -0.12 -3.54 10.06 22.34 0.22 -3.32 15 18 C 0.00 -0.06 6.98 22.59 0.16 0.10 15 19 O -0.32 -15.19 10.43 -76.00 -0.79 -15.99 15 20 H 0.09 3.08 8.14 -2.38 -0.02 3.06 15 21 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 22 H 0.07 2.34 7.94 -2.39 -0.02 2.33 15 23 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.03 1.69 8.14 -2.38 -0.02 1.67 15 25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 26 H 0.14 3.71 8.06 -2.91 -0.02 3.69 15 27 H 0.18 2.20 8.06 -2.91 -0.02 2.18 15 28 H 0.18 2.19 8.06 -2.91 -0.02 2.17 15 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -72.78 256.43 4.61 -68.18 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.14 Total: 4.64 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.73 Total: -32.98 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.57 Total: -31.94 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -72.78 4.61 -68.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270322.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.209 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds