Wall clock time and date at job start Mon Mar 30 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52070 * 108.90033 * 302.85775 * 9 7 2 11 11 O 1.42909 * 110.76600 * 174.44566 * 10 9 7 12 12 C 1.36464 * 115.92387 * 84.40863 * 11 10 9 13 13 C 1.38467 * 120.30473 * 111.74692 * 12 11 10 14 14 C 1.38342 * 119.70810 * 179.97438 * 13 12 11 15 15 C 1.38258 * 120.21570 * 0.04817 * 14 13 12 16 16 C 1.38338 * 120.21819 * 359.95134 * 15 14 13 17 17 C 1.38455 * 119.72000 * 0.02562 * 16 15 14 18 18 O 1.36463 * 120.32910 * 180.02562 * 17 16 15 19 19 C 1.42911 * 115.92106 * 248.25129 * 18 17 16 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09000 * 108.88123 * 61.38035 * 9 7 2 22 22 H 1.08995 * 109.21578 * 294.77788 * 10 9 7 23 23 H 1.08998 * 109.21549 * 54.11376 * 10 9 7 24 24 H 1.07994 * 120.14540 * 359.92005 * 13 12 11 25 25 H 1.08007 * 119.89164 * 180.02562 * 14 13 12 26 26 H 1.08000 * 119.88260 * 179.97438 * 15 14 13 27 27 H 1.08007 * 120.13943 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.21894 * 155.25671 * 19 18 17 29 29 H 1.09000 * 109.21544 * 35.92358 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3291 -2.5357 1.2084 11 8 -0.4991 -3.7000 1.1790 12 6 0.0532 -4.8380 1.6912 13 6 -0.4352 -5.3841 2.8662 14 6 0.1336 -6.5384 3.3740 15 6 1.1857 -7.1447 2.7130 16 6 1.6759 -6.6016 1.5389 17 6 1.1088 -5.4468 1.0275 18 8 1.5822 -4.9007 -0.1300 19 6 2.2505 -3.6441 -0.0004 20 1 -0.4850 0.8401 0.0004 21 1 0.6463 -2.5574 -0.9057 22 1 0.9301 -2.5457 2.1176 23 1 -0.3015 -1.6467 1.2056 24 1 -1.2559 -4.9105 3.3843 25 1 -0.2453 -6.9671 4.2901 26 1 1.6260 -8.0455 3.1145 27 1 2.4976 -7.0766 1.0234 28 1 2.9410 -3.5173 -0.8341 29 1 2.8113 -3.6308 0.9342 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:16 Heat of formation + Delta-G solvation = -52.951110 kcal Electronic energy + Delta-G solvation = -14907.419304 eV Core-core repulsion = 12375.081217 eV Total energy + Delta-G solvation = -2532.338087 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.08522 -37.04017 -36.56770 -33.92028 -30.89589 -30.18169 -28.58218 -25.44007 -24.78198 -22.40183 -21.34318 -20.14777 -17.70627 -16.78952 -16.34664 -15.64494 -14.88186 -14.71550 -14.44831 -14.07545 -13.57611 -13.07157 -12.92014 -12.28303 -11.89955 -11.82536 -11.51457 -11.02607 -10.97119 -10.51967 -10.20234 -10.15446 -9.57126 -9.08350 -8.84645 -8.49450 -8.44192 -7.91755 -6.20159 -4.30183 1.56157 1.60611 3.21679 3.27314 3.28987 3.82967 4.21038 4.42951 4.61859 5.10361 5.20347 5.22359 5.57476 5.79302 5.85858 5.92555 6.13511 6.20988 6.34051 6.48752 6.57645 6.69525 6.82494 6.97698 7.01825 7.36509 7.52906 7.74951 8.01778 8.22900 8.43854 8.73535 9.35861 10.85109 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051970 B = 0.008097 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.641663 B = 3457.290861 C = 3711.615597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.062 0.938 9 C -0.012 4.012 10 C 0.063 3.937 11 O -0.336 6.336 12 C 0.084 3.916 13 C -0.130 4.130 14 C -0.121 4.121 15 C -0.129 4.129 16 C -0.126 4.126 17 C 0.070 3.930 18 O -0.335 6.335 19 C 0.071 3.929 20 H 0.267 0.733 21 H 0.046 0.954 22 H 0.026 0.974 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -9.040 5.585 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.031 4.031 10 C -0.010 4.010 11 O -0.253 6.253 12 C 0.039 3.961 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.144 4.144 17 C 0.026 3.974 18 O -0.252 6.252 19 C -0.002 4.002 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.160 0.840 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.110 0.890 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.548 -8.916 5.305 10.490 hybrid contribution 0.676 1.101 0.163 1.302 sum 2.224 -7.816 5.467 9.794 Atomic orbital electron populations 1.69729 1.05969 1.27281 1.49621 1.25030 0.95005 0.99577 0.94370 0.86479 0.79496 0.82273 0.78803 1.21022 1.20082 1.20002 1.20933 0.93082 0.89658 1.52254 0.91973 1.19467 0.93964 0.92901 0.96724 1.23401 0.95287 0.85083 0.97236 1.86355 1.42213 1.16478 1.80273 1.19477 0.93625 0.90497 0.92542 1.21130 1.01793 0.97672 0.94298 1.20955 0.97067 0.95793 1.00137 1.20910 0.97847 1.00399 0.95541 1.21065 1.00365 0.96965 0.96015 1.19331 0.94589 0.94962 0.88541 1.86258 1.74364 1.37924 1.26620 1.22942 0.94809 0.81344 1.01154 0.92243 0.93606 0.95514 0.84043 0.85345 0.85904 0.85920 0.85499 0.88978 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 11.04 55.43 0.61 -24.00 15 2 C 0.06 1.66 5.27 -17.82 -0.09 1.57 15 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.52 -13.85 8.53 -34.44 -0.29 -14.14 15 8 H 0.06 1.59 7.72 -52.49 -0.41 1.18 15 9 C -0.01 -0.30 2.26 -92.76 -0.21 -0.51 15 10 C 0.06 1.57 5.60 36.68 0.21 1.78 15 11 O -0.34 -8.10 10.16 -36.69 -0.37 -8.48 15 12 C 0.08 1.75 5.73 -39.31 -0.23 1.52 15 13 C -0.13 -2.22 10.01 -39.46 -0.39 -2.62 15 14 C -0.12 -1.70 10.04 -39.54 -0.40 -2.10 15 15 C -0.13 -1.78 10.04 -39.54 -0.40 -2.17 15 16 C -0.13 -2.05 10.01 -39.46 -0.39 -2.44 15 17 C 0.07 1.43 5.73 -39.31 -0.23 1.20 15 18 O -0.33 -7.42 10.16 -36.68 -0.37 -7.80 15 19 C 0.07 1.58 5.68 36.64 0.21 1.79 15 20 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 21 H 0.05 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.03 0.64 7.93 -51.93 -0.41 0.23 15 23 H 0.14 3.84 5.59 -51.93 -0.29 3.55 15 24 H 0.13 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.13 1.80 8.06 -52.48 -0.42 1.37 15 28 H 0.09 1.91 8.13 -51.93 -0.42 1.48 15 29 H 0.04 0.89 7.93 -51.93 -0.41 0.48 15 LS Contribution 247.10 15.07 3.72 3.72 Total: -1.00 -28.75 247.10 -6.84 -35.59 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.19 Total: 1.64 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.22 Total: -16.12 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.61 Total: -24.00 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.75 Total: -16.27 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.75 -6.84 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.359 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds