Wall clock time and date at job start Mon Mar 30 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38284 * 119.98737 * 90.00035 * 10 9 7 12 12 C 1.38202 * 120.09128 * 180.02562 * 11 10 9 13 13 C 1.38261 * 120.10701 * 0.03166 * 12 11 10 14 14 C 1.38592 * 119.91397 * 359.83360 * 13 12 11 15 15 C 1.38098 * 119.98110 * 269.71985 * 10 9 7 16 16 O 1.35968 * 120.54484 * 180.27583 * 14 13 12 17 17 C 1.43041 * 116.84523 * 343.27223 * 16 14 13 18 18 O 1.43273 * 108.60653 * 47.50856 * 17 16 14 19 19 C 1.43076 * 113.04273 * 294.56220 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 119.95066 * 0.06578 * 11 10 9 24 24 H 1.08008 * 119.94998 * 180.02562 * 12 11 10 25 25 H 1.07998 * 120.00525 * 0.02562 * 15 10 9 26 26 H 1.08996 * 109.61838 * 167.24345 * 17 16 14 27 27 H 1.09007 * 109.61596 * 287.59747 * 17 16 14 28 28 H 1.08995 * 109.50026 * 288.60905 * 19 18 17 29 29 H 1.09002 * 109.49841 * 168.50286 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6792 -4.1753 1.1851 12 6 3.5777 -5.2254 1.1830 13 6 4.0308 -5.7481 -0.0142 14 6 3.5802 -5.2199 -1.2136 15 6 2.6743 -4.1676 -1.2088 16 8 4.0130 -5.7277 -2.3983 17 6 5.1892 -6.5409 -2.3613 18 8 5.0529 -7.4940 -1.3003 19 6 5.0175 -6.8883 -0.0046 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3268 -3.7690 2.1216 24 1 3.9266 -5.6384 2.1180 25 1 2.3202 -3.7556 -2.1422 26 1 5.3024 -7.0641 -3.3108 27 1 6.0625 -5.9133 -2.1830 28 1 6.0081 -6.5100 0.2474 29 1 4.7111 -7.6283 0.7347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:31 Heat of formation + Delta-G solvation = -71.648289 kcal Electronic energy + Delta-G solvation = -14342.298111 eV Core-core repulsion = 11809.149254 eV Total energy + Delta-G solvation = -2533.148858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57834 -37.71360 -36.22046 -33.53733 -31.71637 -29.93552 -28.30576 -26.05528 -25.09642 -22.70458 -21.94206 -20.07481 -17.82496 -16.74911 -16.48250 -16.32672 -15.17908 -14.80065 -14.50850 -14.15373 -13.90897 -13.48252 -12.96197 -12.50621 -12.28458 -11.92160 -11.28504 -10.98213 -10.93474 -10.76790 -10.56977 -10.45144 -10.17524 -9.53390 -9.47625 -8.45157 -8.05379 -7.68421 -6.07337 -4.11539 1.83424 1.93637 3.30510 3.34629 3.36769 3.40426 3.65738 4.27047 4.46143 4.76053 4.89674 5.09555 5.21485 5.27619 5.33476 5.52591 5.73804 5.97746 6.04994 6.24050 6.53202 6.61045 6.71169 6.98566 7.09293 7.30872 7.49304 7.74197 7.79807 7.88089 8.26569 8.92922 9.52267 11.02655 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.006612 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.854179 B = 4233.714400 C = 4384.990946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.047 3.953 10 C 0.004 3.996 11 C -0.150 4.150 12 C -0.080 4.080 13 C -0.236 4.236 14 C 0.127 3.873 15 C -0.147 4.147 16 O -0.334 6.334 17 C 0.224 3.776 18 O -0.393 6.393 19 C 0.111 3.889 20 H 0.263 0.737 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.123 0.877 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -11.296 -0.572 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.010 3.990 10 C 0.004 3.996 11 C -0.168 4.168 12 C -0.098 4.098 13 C -0.237 4.237 14 C 0.083 3.917 15 C -0.166 4.166 16 O -0.251 6.251 17 C 0.111 3.889 18 O -0.313 6.313 19 C 0.035 3.965 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.141 0.859 24 H 0.136 0.864 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.938 -11.357 -0.793 14.473 hybrid contribution 0.661 1.149 0.161 1.335 sum 9.599 -10.208 -0.631 14.026 Atomic orbital electron populations 1.69947 1.06037 1.27028 1.50176 1.25004 0.94898 0.99269 0.95066 0.86572 0.79523 0.82700 0.78744 1.20143 1.21187 1.20141 1.20983 0.93012 0.89732 1.51478 0.92477 1.18406 0.92487 0.89365 0.98748 1.20580 0.94328 0.93755 0.90974 1.21029 0.99647 0.97469 0.98628 1.20608 0.96895 0.96462 0.95848 1.19999 1.06844 1.03047 0.93852 1.18530 0.96309 0.93572 0.83312 1.20511 1.00554 0.95903 0.99602 1.86216 1.44877 1.64169 1.29807 1.24302 0.86130 0.86076 0.92361 1.88204 1.93576 1.33786 1.15712 1.21411 0.96800 0.93721 0.84590 0.92702 0.94876 0.94992 0.85852 0.86401 0.85326 0.84701 0.92519 0.91901 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.05 1.20 5.10 -29.03 -0.15 1.05 15 10 C 0.00 0.08 5.07 -104.66 -0.53 -0.45 15 11 C -0.15 -2.89 9.70 -39.58 -0.38 -3.28 15 12 C -0.08 -1.32 9.72 -39.59 -0.38 -1.70 15 13 C -0.24 -3.96 5.82 -104.44 -0.61 -4.57 15 14 C 0.13 2.39 6.56 -39.23 -0.26 2.13 15 15 C -0.15 -3.08 9.63 -39.41 -0.38 -3.46 15 16 O -0.33 -5.75 10.48 -43.52 -0.46 -6.21 15 17 C 0.22 2.88 7.94 101.05 0.80 3.68 15 18 O -0.39 -5.53 10.97 -59.11 -0.65 -6.18 15 19 C 0.11 1.46 6.87 36.05 0.25 1.71 15 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.03 0.88 8.09 -51.93 -0.42 0.46 15 22 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 23 H 0.12 2.27 8.06 -52.49 -0.42 1.85 15 24 H 0.12 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.13 2.68 8.06 -52.49 -0.42 2.26 15 26 H 0.14 1.27 8.14 -51.93 -0.42 0.84 15 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 15 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 29 H 0.11 1.18 8.14 -51.93 -0.42 0.75 15 LS Contribution 255.48 15.07 3.85 3.85 Total: -1.00 -30.80 255.48 -6.93 -37.73 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.34 Total: -2.16 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.05 Total: -17.95 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.10 Total: -12.39 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.80 -6.93 -37.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.917 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds