Wall clock time and date at job start Mon Mar 30 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38284 * 119.98737 * 90.00035 * 10 9 7 12 12 C 1.38202 * 120.09128 * 180.02562 * 11 10 9 13 13 C 1.38261 * 120.10701 * 0.03166 * 12 11 10 14 14 C 1.38592 * 119.91397 * 359.83360 * 13 12 11 15 15 C 1.38098 * 119.98110 * 269.71985 * 10 9 7 16 16 O 1.35968 * 120.54484 * 180.27583 * 14 13 12 17 17 C 1.43041 * 116.84523 * 343.27223 * 16 14 13 18 18 O 1.43273 * 108.60653 * 47.50856 * 17 16 14 19 19 C 1.43076 * 113.04273 * 294.56220 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 119.95066 * 0.06578 * 11 10 9 24 24 H 1.08008 * 119.94998 * 180.02562 * 12 11 10 25 25 H 1.07998 * 120.00525 * 0.02562 * 15 10 9 26 26 H 1.08996 * 109.61838 * 167.24345 * 17 16 14 27 27 H 1.09007 * 109.61596 * 287.59747 * 17 16 14 28 28 H 1.08995 * 109.50026 * 288.60905 * 19 18 17 29 29 H 1.09002 * 109.49841 * 168.50286 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6792 -4.1753 1.1851 12 6 3.5777 -5.2254 1.1830 13 6 4.0308 -5.7481 -0.0142 14 6 3.5802 -5.2199 -1.2136 15 6 2.6743 -4.1676 -1.2088 16 8 4.0130 -5.7277 -2.3983 17 6 5.1892 -6.5409 -2.3613 18 8 5.0529 -7.4940 -1.3003 19 6 5.0175 -6.8883 -0.0046 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3268 -3.7690 2.1216 24 1 3.9266 -5.6384 2.1180 25 1 2.3202 -3.7556 -2.1422 26 1 5.3024 -7.0641 -3.3108 27 1 6.0625 -5.9133 -2.1830 28 1 6.0081 -6.5100 0.2474 29 1 4.7111 -7.6283 0.7347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:31 Heat of formation + Delta-G solvation = -90.868103 kcal Electronic energy + Delta-G solvation = -14343.131545 eV Core-core repulsion = 11809.149254 eV Total energy + Delta-G solvation = -2533.982291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.83326 -39.10790 -37.39412 -35.47532 -33.43760 -31.33381 -30.00576 -27.26163 -26.63517 -24.44825 -23.42096 -21.45677 -19.12472 -18.50817 -17.96322 -17.69567 -16.69064 -16.18924 -16.05001 -15.34784 -15.28152 -14.88362 -14.50555 -14.25068 -13.79160 -13.46581 -13.18279 -12.64910 -12.58339 -12.41178 -12.07931 -12.01355 -11.56387 -11.47262 -11.07600 -10.62300 -9.56972 -9.13818 -8.22382 -6.36104 0.37560 0.47235 1.39317 1.42260 1.50579 2.18573 2.38900 2.64991 2.86329 3.08802 3.64140 3.82292 3.90643 4.21422 4.33614 4.39491 4.44518 4.50239 4.68884 4.74316 5.04184 5.25700 5.28018 5.31361 5.37802 5.65886 5.71571 5.87404 5.98536 6.13789 6.41360 6.75457 7.32402 8.87208 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.006612 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.854179 B = 4233.714400 C = 4384.990946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.055 3.945 10 C -0.026 4.026 11 C -0.161 4.161 12 C -0.064 4.064 13 C -0.228 4.228 14 C 0.119 3.881 15 C -0.170 4.170 16 O -0.352 6.352 17 C 0.213 3.787 18 O -0.401 6.401 19 C 0.109 3.891 20 H 0.267 0.733 21 H 0.012 0.988 22 H 0.002 0.998 23 H 0.126 0.874 24 H 0.165 0.835 25 H 0.110 0.890 26 H 0.169 0.831 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -12.485 0.178 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.026 4.026 11 C -0.180 4.180 12 C -0.082 4.082 13 C -0.229 4.229 14 C 0.075 3.925 15 C -0.188 4.188 16 O -0.269 6.269 17 C 0.102 3.898 18 O -0.321 6.321 19 C 0.033 3.967 20 H 0.075 0.925 21 H 0.031 0.969 22 H 0.020 0.980 23 H 0.144 0.856 24 H 0.182 0.818 25 H 0.129 0.871 26 H 0.186 0.814 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.617 -12.566 -0.047 17.113 hybrid contribution -0.120 1.388 -0.113 1.398 sum 11.496 -11.178 -0.160 16.035 Atomic orbital electron populations 1.70075 1.07702 1.28143 1.50969 1.25939 0.95792 1.03158 0.94401 0.85461 0.78285 0.77894 0.79194 1.19473 1.20459 1.18952 1.21302 0.93069 0.91072 1.51487 0.92709 1.18135 0.92837 0.90985 0.96184 1.20245 0.95455 0.94020 0.92871 1.21126 1.00675 0.98678 0.97487 1.21013 0.94797 0.94576 0.97785 1.20548 1.06304 1.03274 0.92814 1.18558 0.95919 0.93062 0.84972 1.20388 1.02286 0.97654 0.98520 1.86197 1.46687 1.64705 1.29299 1.24875 0.85002 0.86185 0.93785 1.88205 1.93474 1.34161 1.16211 1.21704 0.97000 0.93011 0.84966 0.92451 0.96947 0.98010 0.85589 0.81754 0.87137 0.81434 0.90630 0.89037 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 15 2 C 0.01 0.32 5.46 84.66 0.46 0.78 15 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 7 C -0.53 -30.77 9.09 25.60 0.23 -30.54 15 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.06 3.04 5.10 29.10 0.15 3.19 15 10 C -0.03 -1.18 5.07 -19.89 -0.10 -1.28 15 11 C -0.16 -6.20 9.70 22.27 0.22 -5.99 15 12 C -0.06 -1.91 9.72 22.27 0.22 -1.70 15 13 C -0.23 -6.97 5.82 -19.75 -0.11 -7.08 15 14 C 0.12 4.42 6.56 22.50 0.15 4.56 15 15 C -0.17 -7.40 9.63 22.38 0.22 -7.18 15 16 O -0.35 -11.68 10.48 -70.36 -0.74 -12.42 15 17 C 0.21 4.80 7.94 113.37 0.90 5.70 15 18 O -0.40 -9.68 10.97 -126.15 -1.38 -11.06 15 19 C 0.11 2.34 6.87 71.26 0.49 2.83 15 20 H 0.27 15.14 8.31 -92.70 -0.77 14.37 15 21 H 0.01 0.70 8.09 -2.38 -0.02 0.68 15 22 H 0.00 0.09 8.08 -2.39 -0.02 0.07 15 23 H 0.13 4.65 8.06 -2.91 -0.02 4.63 15 24 H 0.16 3.38 8.06 -2.91 -0.02 3.36 15 25 H 0.11 5.00 8.06 -2.91 -0.02 4.98 15 26 H 0.17 2.55 8.14 -2.39 -0.02 2.54 15 27 H 0.08 1.43 8.13 -2.38 -0.02 1.41 15 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 29 H 0.13 2.19 8.14 -2.39 -0.02 2.17 15 Total: -1.00 -69.08 255.48 4.15 -64.94 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.14 Total: 4.91 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.81 Total: -36.72 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.06 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -2.12 Total: -23.48 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.08 4.15 -64.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.930 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds