Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.43985 * 110.57472 * 289.31619 * 11 10 9 13 13 C 1.36498 * 105.48825 * 214.31998 * 12 11 10 14 14 C 1.38551 * 131.53656 * 197.25024 * 13 12 11 15 15 C 1.38243 * 120.03029 * 180.02562 * 14 13 12 16 16 C 1.38253 * 120.14115 * 359.97102 * 15 14 13 17 17 C 1.38240 * 120.14608 * 0.02934 * 16 15 14 18 18 C 1.38538 * 120.02900 * 359.97438 * 17 16 15 19 19 O 1.36502 * 131.53333 * 179.97438 * 18 17 16 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08999 * 110.51122 * 52.24343 * 11 10 9 26 26 H 1.07997 * 119.98006 * 0.02562 * 14 13 12 27 27 H 1.07994 * 119.92346 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.92289 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.98383 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 8 0.8405 -5.2025 1.2698 13 6 0.8855 -6.5509 1.4767 14 6 0.1788 -7.3720 2.3405 15 6 0.4198 -8.7332 2.3535 16 6 1.3652 -9.2790 1.5052 17 6 2.0740 -8.4659 0.6406 18 6 1.8379 -7.1009 0.6222 19 8 2.3898 -6.0968 -0.1198 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.7482 -5.0051 -0.8094 26 1 -0.5606 -6.9483 3.0039 27 1 -0.1317 -9.3715 3.0278 28 1 1.5503 -10.3429 1.5180 29 1 2.8122 -8.8949 -0.0207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278742.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -50.549100 kcal Electronic energy + Delta-G solvation = -14167.013391 eV Core-core repulsion = 11634.779463 eV Total energy + Delta-G solvation = -2532.233928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87092 -37.74044 -35.89526 -33.97682 -31.70418 -30.54059 -29.19722 -26.36947 -23.17455 -22.69927 -22.57643 -20.51890 -17.86597 -17.54804 -17.14949 -16.32024 -15.22186 -14.48641 -14.35625 -14.24602 -13.63730 -13.61702 -12.95085 -12.55421 -12.45837 -12.20917 -12.10168 -11.31221 -11.03976 -10.95309 -10.64052 -10.46307 -9.98487 -9.58742 -9.18107 -8.82030 -8.40016 -7.85207 -6.04600 -4.07846 1.25897 1.28555 3.09435 3.29618 3.36939 3.41341 3.68895 3.71067 4.43074 4.61425 4.95158 5.07921 5.21326 5.24948 5.30640 5.32178 5.52212 5.64445 6.14050 6.18857 6.28695 6.34447 6.39320 6.54710 6.62302 6.85474 7.42658 7.57829 7.70390 7.93332 8.32620 8.98188 9.56432 11.06826 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.072560 B = 0.005477 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.793662 B = 5110.629900 C = 5349.312223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.113 4.113 11 C 0.238 3.762 12 O -0.293 6.293 13 C 0.038 3.962 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.109 4.109 18 C 0.032 3.968 19 O -0.310 6.310 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.020 0.980 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -16.693 2.320 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.151 4.151 11 C 0.147 3.853 12 O -0.209 6.209 13 C -0.007 4.007 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.127 4.127 18 C -0.013 4.013 19 O -0.227 6.227 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.038 0.962 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.134 -16.342 2.305 16.542 hybrid contribution 0.375 1.093 -0.104 1.160 sum 1.509 -15.249 2.201 15.481 Atomic orbital electron populations 1.69983 1.06075 1.26661 1.50485 1.25022 0.94887 0.99370 0.95134 0.86484 0.80088 0.83518 0.77616 1.19671 1.20945 1.20941 1.21183 0.93132 0.90630 1.51103 0.92371 1.19073 0.93682 0.90453 0.98053 1.22067 0.99842 0.90120 1.03072 1.25683 0.86941 0.88599 0.84067 1.87565 1.76331 1.18156 1.38865 1.20086 0.97890 0.84008 0.98762 1.20111 1.00369 0.92185 1.00100 1.20850 0.98990 0.93646 0.99953 1.20830 0.97091 0.99588 0.96325 1.20046 1.02516 0.88447 1.01724 1.20000 0.95097 0.91052 0.95159 1.87435 1.46199 1.21391 1.67638 0.92927 0.95501 0.96193 0.90054 0.91187 0.88863 0.84901 0.84922 0.84970 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.02 0.64 4.92 -27.88 -0.14 0.50 15 10 C -0.11 -2.44 5.30 -26.73 -0.14 -2.58 15 11 C 0.24 4.65 4.13 37.16 0.15 4.80 15 12 O -0.29 -5.96 10.94 -45.68 -0.50 -6.46 15 13 C 0.04 0.65 7.15 -39.08 -0.28 0.37 15 14 C -0.11 -1.49 10.06 -39.46 -0.40 -1.88 15 15 C -0.12 -1.25 10.04 -39.57 -0.40 -1.65 15 16 C -0.12 -1.26 10.04 -39.57 -0.40 -1.66 15 17 C -0.11 -1.40 10.06 -39.47 -0.40 -1.79 15 18 C 0.03 0.53 7.15 -39.09 -0.28 0.25 15 19 O -0.31 -5.75 11.10 -45.70 -0.51 -6.26 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.03 0.75 8.05 -51.93 -0.42 0.34 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 24 H 0.07 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.09 1.71 8.14 -51.93 -0.42 1.28 15 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.13 1.00 8.06 -52.49 -0.42 0.57 15 28 H 0.13 0.95 8.06 -52.49 -0.42 0.53 15 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 LS Contribution 258.50 15.07 3.90 3.90 Total: -1.00 -31.43 258.50 -7.42 -38.85 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.34 Total: -3.28 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.68 Total: -17.25 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.01 Total: -12.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.43 -7.42 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278742.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.697 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds