Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.43985 * 110.57472 * 289.31619 * 11 10 9 13 13 C 1.36498 * 105.48825 * 214.31998 * 12 11 10 14 14 C 1.38551 * 131.53656 * 197.25024 * 13 12 11 15 15 C 1.38243 * 120.03029 * 180.02562 * 14 13 12 16 16 C 1.38253 * 120.14115 * 359.97102 * 15 14 13 17 17 C 1.38240 * 120.14608 * 0.02934 * 16 15 14 18 18 C 1.38538 * 120.02900 * 359.97438 * 17 16 15 19 19 O 1.36502 * 131.53333 * 179.97438 * 18 17 16 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08999 * 110.51122 * 52.24343 * 11 10 9 26 26 H 1.07997 * 119.98006 * 0.02562 * 14 13 12 27 27 H 1.07994 * 119.92346 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.92289 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.98383 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 8 0.8405 -5.2025 1.2698 13 6 0.8855 -6.5509 1.4767 14 6 0.1788 -7.3720 2.3405 15 6 0.4198 -8.7332 2.3535 16 6 1.3652 -9.2790 1.5052 17 6 2.0740 -8.4659 0.6406 18 6 1.8379 -7.1009 0.6222 19 8 2.3898 -6.0968 -0.1198 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.7482 -5.0051 -0.8094 26 1 -0.5606 -6.9483 3.0039 27 1 -0.1317 -9.3715 3.0278 28 1 1.5503 -10.3429 1.5180 29 1 2.8122 -8.8949 -0.0207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278742.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -69.903577 kcal Electronic energy + Delta-G solvation = -14167.852664 eV Core-core repulsion = 11634.779463 eV Total energy + Delta-G solvation = -2533.073201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.15899 -38.81897 -37.26203 -35.98533 -33.66253 -31.56167 -30.49063 -28.23501 -25.02164 -23.82595 -23.70904 -22.34180 -19.08089 -18.89444 -18.60567 -18.20321 -16.56140 -16.43406 -15.67587 -15.45079 -14.92106 -14.81963 -14.60589 -14.23017 -14.02462 -13.84112 -13.15162 -13.01894 -12.88650 -12.51530 -12.10693 -11.93414 -11.84860 -11.62587 -11.27079 -10.61776 -9.84934 -9.05711 -8.25232 -6.37601 0.19752 0.26668 1.38919 1.39645 1.53287 1.83927 2.31926 2.42451 2.68214 3.08368 3.54071 3.60357 3.77860 4.14539 4.16654 4.21531 4.37437 4.49687 4.60212 4.76642 4.92091 5.13239 5.20006 5.37026 5.40946 5.43718 5.53290 5.62136 5.74016 6.12792 6.20416 6.77232 7.31900 8.87289 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.072560 B = 0.005477 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.793662 B = 5110.629900 C = 5349.312223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.245 3.755 12 O -0.326 6.326 13 C -0.009 4.009 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.102 4.102 17 C -0.106 4.106 18 C -0.005 4.005 19 O -0.321 6.321 20 H 0.266 0.734 21 H -0.005 1.005 22 H 0.002 0.998 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -18.716 2.835 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.005 4.005 10 C -0.138 4.138 11 C 0.153 3.847 12 O -0.244 6.244 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.049 4.049 19 O -0.238 6.238 20 H 0.074 0.926 21 H 0.013 0.987 22 H 0.021 0.979 23 H 0.111 0.889 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.160 0.840 27 H 0.194 0.806 28 H 0.197 0.803 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.912 -18.396 2.824 18.710 hybrid contribution 0.077 1.509 -0.190 1.522 sum 1.989 -16.887 2.634 17.207 Atomic orbital electron populations 1.70114 1.07869 1.27962 1.51184 1.26020 0.95839 1.03551 0.94401 0.85306 0.78995 0.78275 0.77906 1.18509 1.20008 1.20350 1.21611 0.93672 0.91831 1.51285 0.91794 1.18874 0.93944 0.92082 0.95598 1.21773 0.98771 0.89997 1.03227 1.25329 0.86826 0.88146 0.84425 1.87482 1.77004 1.20729 1.39153 1.20578 1.00368 0.82970 1.01352 1.20546 1.00121 0.93381 0.99374 1.21415 0.98350 0.92464 0.99661 1.21442 0.95052 1.01478 0.94025 1.20549 1.02842 0.86873 1.02213 1.20461 0.96340 0.92101 0.95969 1.87346 1.46354 1.21762 1.68380 0.92563 0.98687 0.97920 0.88856 0.91909 0.88537 0.84034 0.80640 0.80307 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 15 2 C 0.00 0.00 5.46 84.65 0.46 0.46 15 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 15 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 15 8 H 0.06 3.57 7.74 -2.91 -0.02 3.54 15 9 C 0.03 1.77 4.92 29.85 0.15 1.92 15 10 C -0.10 -4.52 5.30 30.59 0.16 -4.36 15 11 C 0.24 10.06 4.13 71.98 0.30 10.36 15 12 O -0.33 -14.11 10.94 -76.02 -0.83 -14.94 15 13 C -0.01 -0.30 7.15 22.59 0.16 -0.14 15 14 C -0.12 -3.01 10.06 22.35 0.22 -2.79 15 15 C -0.10 -1.76 10.04 22.27 0.22 -1.54 15 16 C -0.10 -1.67 10.04 22.27 0.22 -1.44 15 17 C -0.11 -2.46 10.06 22.34 0.22 -2.23 15 18 C 0.00 -0.15 7.15 22.59 0.16 0.01 15 19 O -0.32 -12.27 11.10 -76.07 -0.84 -13.12 15 20 H 0.27 15.29 8.31 -92.71 -0.77 14.51 15 21 H -0.01 -0.32 8.05 -2.39 -0.02 -0.34 15 22 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 23 H 0.09 3.91 8.14 -2.39 -0.02 3.89 15 24 H 0.06 2.87 8.14 -2.38 -0.02 2.85 15 25 H 0.10 3.79 8.14 -2.39 -0.02 3.77 15 26 H 0.14 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.18 1.59 8.06 -2.91 -0.02 1.56 15 28 H 0.18 1.33 8.06 -2.91 -0.02 1.31 15 29 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -71.09 258.50 4.29 -66.79 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.14 Total: 3.10 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 2.52 Total: -31.42 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.68 Total: -28.06 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.09 4.29 -66.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278742.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.110 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds