Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47123 * 240.00244 * 3 2 1 5 5 H 1.48503 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47143 * 119.99958 * 3 2 1 7 7 C 1.37880 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00382 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.70024 * 60.55112 * 9 7 2 11 11 C 1.53412 * 109.69325 * 299.99754 * 9 7 2 12 12 O 1.42828 * 108.38462 * 175.62579 * 11 9 7 13 13 C 1.35843 * 117.87244 * 49.20712 * 12 11 9 14 14 C 1.39203 * 118.47771 * 162.88606 * 13 12 11 15 15 C 1.37992 * 120.33614 * 179.54761 * 14 13 12 16 16 C 1.38202 * 120.01360 * 359.97309 * 15 14 13 17 17 C 1.38606 * 119.92365 * 0.10870 * 16 15 14 18 18 O 1.35896 * 119.90107 * 179.97438 * 17 16 15 19 19 C 1.38271 * 121.79319 * 342.57827 * 13 12 11 20 20 C 1.50752 * 121.42790 * 0.84153 * 19 13 12 21 21 H 0.96994 * 120.00113 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.68302 * 55.90451 * 11 9 7 23 23 H 1.08994 * 109.71407 * 295.36685 * 11 9 7 24 24 H 1.08007 * 119.83089 * 359.53749 * 14 13 12 25 25 H 1.07994 * 119.99382 * 179.97438 * 15 14 13 26 26 H 1.08008 * 120.03382 * 180.12924 * 16 15 14 27 27 H 0.96701 * 113.99841 * 270.01439 * 18 17 16 28 28 H 1.09002 * 109.43566 * 101.99235 * 20 19 13 29 29 H 1.09006 * 109.43535 * 221.85507 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6307 -2.5645 -0.8956 11 6 0.3667 -2.5867 1.2488 12 8 -0.4094 -3.7831 1.1689 13 6 0.2377 -4.9415 0.8778 14 6 -0.4058 -6.1465 1.1454 15 6 0.2123 -7.3459 0.8562 16 6 1.4763 -7.3552 0.2976 17 6 2.1230 -6.1587 0.0304 18 8 3.3661 -6.1683 -0.5184 19 6 1.5039 -4.9489 0.3224 20 6 2.2406 -3.6671 0.0279 21 1 -0.4850 0.8400 0.0004 22 1 -0.2954 -1.7219 1.2915 23 1 0.9927 -2.6141 2.1406 24 1 -1.3938 -6.1427 1.5817 25 1 -0.2919 -8.2775 1.0665 26 1 1.9595 -8.2938 0.0692 27 1 4.0826 -6.1837 0.1309 28 1 2.9870 -3.4915 0.8026 29 1 2.7355 -3.7473 -0.9401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -68.871771 kcal Electronic energy + Delta-G solvation = -14753.159655 eV Core-core repulsion = 12220.131196 eV Total energy + Delta-G solvation = -2533.028459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.08808 -37.84410 -35.77058 -34.08084 -32.00426 -29.70305 -28.80531 -25.22662 -24.68396 -22.36276 -21.74630 -19.03746 -18.09817 -16.69766 -16.27132 -15.83239 -15.21158 -14.55482 -14.34383 -13.93184 -13.36748 -13.07217 -12.76883 -12.39067 -12.12006 -11.69556 -11.25685 -11.02513 -10.76940 -10.69671 -10.33417 -10.23794 -9.74089 -9.36005 -8.98118 -8.52844 -8.13204 -7.55284 -6.17357 -4.24513 1.61856 1.83779 3.24409 3.29802 3.31914 3.98564 4.23958 4.35944 4.56925 5.13844 5.28467 5.42546 5.50581 5.79660 5.99920 6.16607 6.24392 6.34207 6.50899 6.62861 6.75498 6.77666 6.84188 7.04209 7.15984 7.42938 7.63166 7.80261 7.93698 8.13758 8.39062 8.79137 9.41569 10.89968 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046712 B = 0.008292 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.270276 B = 3375.792513 C = 3895.224888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.017 3.983 10 H 0.040 0.960 11 C 0.059 3.941 12 O -0.324 6.324 13 C 0.161 3.839 14 C -0.172 4.172 15 C -0.083 4.083 16 C -0.194 4.194 17 C 0.130 3.870 18 O -0.496 6.496 19 C -0.178 4.178 20 C -0.067 4.067 21 H 0.266 0.734 22 H 0.137 0.863 23 H 0.038 0.962 24 H 0.126 0.874 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.385 0.615 28 H 0.063 0.937 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -10.198 3.077 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.080 0.920 9 C -0.002 4.002 10 H 0.058 0.942 11 C -0.015 4.015 12 O -0.237 6.237 13 C 0.114 3.886 14 C -0.191 4.191 15 C -0.102 4.102 16 C -0.213 4.213 17 C 0.085 3.915 18 O -0.306 6.306 19 C -0.179 4.179 20 C -0.104 4.104 21 H 0.076 0.924 22 H 0.154 0.846 23 H 0.056 0.944 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.240 0.760 28 H 0.082 0.918 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.702 -9.995 2.579 10.461 hybrid contribution 0.955 0.957 0.344 1.395 sum 2.657 -9.037 2.923 9.863 Atomic orbital electron populations 1.69797 1.05968 1.27251 1.49951 1.25049 0.94976 0.99507 0.94553 0.86527 0.79529 0.82480 0.78773 1.20076 1.21121 1.20116 1.21012 0.93097 0.89733 1.51585 0.92041 1.19300 0.93490 0.92705 0.94693 0.94180 1.23660 0.96421 0.82818 0.98555 1.85993 1.38344 1.15155 1.84251 1.18751 0.90311 0.87193 0.92391 1.20605 1.01627 0.90141 1.06737 1.20608 0.94427 0.97030 0.98098 1.21098 0.97344 0.97183 1.05637 1.18187 0.86284 0.91379 0.95638 1.84768 1.13613 1.96471 1.35755 1.20569 0.96683 0.96774 1.03878 1.20544 0.98132 0.90523 1.01214 0.92389 0.84569 0.94395 0.85623 0.85785 0.86139 0.75965 0.91817 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.32 55.43 0.63 -24.13 15 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 15 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -13.80 8.55 -34.44 -0.29 -14.10 15 8 H 0.06 1.60 7.75 -52.49 -0.41 1.19 15 9 C 0.02 0.42 2.34 -91.51 -0.21 0.21 15 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 11 C 0.06 1.43 6.14 37.37 0.23 1.66 15 12 O -0.32 -7.45 10.27 -19.25 -0.20 -7.65 15 13 C 0.16 3.32 6.47 -39.21 -0.25 3.07 15 14 C -0.17 -2.96 9.93 -39.31 -0.39 -3.35 15 15 C -0.08 -1.22 10.03 -39.68 -0.40 -1.62 15 16 C -0.19 -2.96 9.98 -39.46 -0.39 -3.35 15 17 C 0.13 2.27 6.67 -39.17 -0.26 2.01 15 18 O -0.50 -7.77 12.64 -19.41 -0.25 -8.01 15 19 C -0.18 -3.60 5.76 -104.30 -0.60 -4.20 15 20 C -0.07 -1.46 4.75 -27.80 -0.13 -1.59 15 21 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 22 H 0.14 3.58 6.02 -51.93 -0.31 3.27 15 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.13 1.92 8.06 -52.48 -0.42 1.50 15 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 26 H 0.12 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.39 4.10 9.06 45.56 0.41 4.52 15 28 H 0.06 1.33 8.09 -51.93 -0.42 0.91 15 29 H 0.07 1.56 7.83 -51.93 -0.41 1.16 15 LS Contribution 248.53 15.07 3.75 3.75 Total: -1.00 -29.22 248.53 -6.28 -35.50 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -2.38 Total: 4.68 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.80 Total: -19.73 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.44 Total: -15.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.22 -6.28 -35.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.371 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds