Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47123 * 240.00244 * 3 2 1 5 5 H 1.48503 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47143 * 119.99958 * 3 2 1 7 7 C 1.37880 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00382 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.70024 * 60.55112 * 9 7 2 11 11 C 1.53412 * 109.69325 * 299.99754 * 9 7 2 12 12 O 1.42828 * 108.38462 * 175.62579 * 11 9 7 13 13 C 1.35843 * 117.87244 * 49.20712 * 12 11 9 14 14 C 1.39203 * 118.47771 * 162.88606 * 13 12 11 15 15 C 1.37992 * 120.33614 * 179.54761 * 14 13 12 16 16 C 1.38202 * 120.01360 * 359.97309 * 15 14 13 17 17 C 1.38606 * 119.92365 * 0.10870 * 16 15 14 18 18 O 1.35896 * 119.90107 * 179.97438 * 17 16 15 19 19 C 1.38271 * 121.79319 * 342.57827 * 13 12 11 20 20 C 1.50752 * 121.42790 * 0.84153 * 19 13 12 21 21 H 0.96994 * 120.00113 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.68302 * 55.90451 * 11 9 7 23 23 H 1.08994 * 109.71407 * 295.36685 * 11 9 7 24 24 H 1.08007 * 119.83089 * 359.53749 * 14 13 12 25 25 H 1.07994 * 119.99382 * 179.97438 * 15 14 13 26 26 H 1.08008 * 120.03382 * 180.12924 * 16 15 14 27 27 H 0.96701 * 113.99841 * 270.01439 * 18 17 16 28 28 H 1.09002 * 109.43566 * 101.99235 * 20 19 13 29 29 H 1.09006 * 109.43535 * 221.85507 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6307 -2.5645 -0.8956 11 6 0.3667 -2.5867 1.2488 12 8 -0.4094 -3.7831 1.1689 13 6 0.2377 -4.9415 0.8778 14 6 -0.4058 -6.1465 1.1454 15 6 0.2123 -7.3459 0.8562 16 6 1.4763 -7.3552 0.2976 17 6 2.1230 -6.1587 0.0304 18 8 3.3661 -6.1683 -0.5184 19 6 1.5039 -4.9489 0.3224 20 6 2.2406 -3.6671 0.0279 21 1 -0.4850 0.8400 0.0004 22 1 -0.2954 -1.7219 1.2915 23 1 0.9927 -2.6141 2.1406 24 1 -1.3938 -6.1427 1.5817 25 1 -0.2919 -8.2775 1.0665 26 1 1.9595 -8.2938 0.0692 27 1 4.0826 -6.1837 0.1309 28 1 2.9870 -3.4915 0.8026 29 1 2.7355 -3.7473 -0.9401 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -88.590092 kcal Electronic energy + Delta-G solvation = -14754.014705 eV Core-core repulsion = 12220.131196 eV Total energy + Delta-G solvation = -2533.883509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.59579 -39.30651 -37.14670 -35.93702 -33.82979 -31.30818 -30.22535 -27.14455 -26.42039 -23.96953 -23.16338 -20.72723 -19.50392 -18.62163 -17.87745 -17.33839 -16.63301 -16.40715 -15.82462 -15.48626 -14.97037 -14.78114 -14.36399 -14.19640 -13.68437 -13.08556 -12.87142 -12.82490 -12.48372 -12.31269 -12.07648 -11.80969 -11.59292 -11.10841 -10.90113 -10.56698 -9.49682 -9.03754 -8.22290 -6.38137 0.30077 0.47373 1.41857 1.43230 1.51731 2.36784 2.57246 2.76788 3.07533 3.32885 3.94356 4.05190 4.16612 4.34054 4.44509 4.56858 4.65404 4.74567 4.84867 4.94559 5.09767 5.39383 5.42908 5.48731 5.55316 5.58906 5.76380 5.85026 6.14131 6.61494 6.73130 6.88958 7.31951 8.84543 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046712 B = 0.008292 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.270276 B = 3375.792513 C = 3895.224888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.015 3.985 10 H -0.004 1.004 11 C 0.074 3.926 12 O -0.342 6.342 13 C 0.120 3.880 14 C -0.175 4.175 15 C -0.065 4.065 16 C -0.181 4.181 17 C 0.129 3.871 18 O -0.504 6.504 19 C -0.208 4.208 20 C -0.054 4.054 21 H 0.267 0.733 22 H 0.110 0.890 23 H 0.041 0.959 24 H 0.141 0.859 25 H 0.172 0.828 26 H 0.157 0.843 27 H 0.407 0.593 28 H 0.068 0.932 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -12.219 3.479 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.082 0.918 9 C -0.004 4.004 10 H 0.014 0.986 11 C -0.001 4.001 12 O -0.256 6.256 13 C 0.074 3.926 14 C -0.194 4.194 15 C -0.083 4.083 16 C -0.199 4.199 17 C 0.084 3.916 18 O -0.317 6.317 19 C -0.210 4.210 20 C -0.091 4.091 21 H 0.077 0.923 22 H 0.128 0.872 23 H 0.059 0.941 24 H 0.159 0.841 25 H 0.189 0.811 26 H 0.175 0.825 27 H 0.266 0.734 28 H 0.087 0.913 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.630 -12.040 2.990 12.682 hybrid contribution 0.679 1.415 0.190 1.581 sum 3.309 -10.626 3.180 11.575 Atomic orbital electron populations 1.69946 1.07452 1.28078 1.50398 1.25887 0.95767 1.02986 0.93929 0.85466 0.78264 0.78024 0.79094 1.19617 1.20765 1.19026 1.21340 0.93403 0.90785 1.51984 0.91774 1.19204 0.93847 0.94062 0.93260 0.98587 1.23220 0.95579 0.83199 0.98080 1.85914 1.38740 1.15638 1.85349 1.19208 0.91385 0.87200 0.94762 1.20931 1.02322 0.89682 1.06442 1.21146 0.93920 0.97669 0.95557 1.21529 0.97273 0.97515 1.03628 1.18305 0.87017 0.91152 0.95085 1.84712 1.13730 1.96365 1.36864 1.20565 0.97154 0.97081 1.06161 1.20283 0.97379 0.90505 1.00945 0.92333 0.87194 0.94062 0.84106 0.81071 0.82537 0.73380 0.91333 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 11.32 21.45 0.24 -52.71 15 2 C 0.01 0.74 5.30 84.66 0.45 1.19 15 3 Si 0.97 42.73 29.54 68.60 2.03 44.76 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.54 -29.66 8.55 25.60 0.22 -29.44 15 8 H 0.06 3.41 7.75 -2.91 -0.02 3.38 15 9 C 0.01 0.79 2.34 -11.37 -0.03 0.77 15 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 11 C 0.07 3.76 6.14 72.12 0.44 4.20 15 12 O -0.34 -16.37 10.27 -91.79 -0.94 -17.31 15 13 C 0.12 4.99 6.47 22.51 0.15 5.13 15 14 C -0.18 -5.64 9.93 22.44 0.22 -5.42 15 15 C -0.07 -1.62 10.03 22.20 0.22 -1.39 15 16 C -0.18 -4.72 9.98 22.35 0.22 -4.50 15 17 C 0.13 4.24 6.67 22.54 0.15 4.39 15 18 O -0.50 -14.60 12.64 -92.38 -1.17 -15.76 15 19 C -0.21 -8.44 5.76 -19.66 -0.11 -8.55 15 20 C -0.05 -2.42 4.75 29.90 0.14 -2.28 15 21 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 22 H 0.11 6.15 6.02 -2.39 -0.01 6.14 15 23 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.14 4.01 8.06 -2.91 -0.02 3.98 15 25 H 0.17 2.69 8.06 -2.91 -0.02 2.66 15 26 H 0.16 3.02 8.06 -2.91 -0.02 2.99 15 27 H 0.41 7.62 9.06 -74.06 -0.67 6.95 15 28 H 0.07 2.91 8.09 -2.39 -0.02 2.89 15 29 H 0.06 2.85 7.83 -2.38 -0.02 2.83 15 Total: -1.00 -65.39 248.53 2.73 -62.66 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.49 Total: 14.28 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 2.08 Total: -35.91 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.71 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -2.11 Total: -33.08 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -65.39 2.73 -62.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.932 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds