Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86805 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47000 * 274.97117 * 3 2 1 5 5 H 1.48498 * 109.47355 * 34.97418 * 3 2 1 6 6 H 1.48504 * 109.47014 * 154.97484 * 3 2 1 7 7 C 1.39971 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 186.07964 * 7 2 1 9 9 C 1.39449 * 119.99945 * 6.08620 * 7 2 1 10 10 N 1.37933 * 127.19348 * 352.77148 * 9 7 2 11 11 H 0.96999 * 126.72543 * 0.02562 * 10 9 7 12 12 N 1.40137 * 106.54744 * 180.02562 * 10 9 7 13 13 N 1.28476 * 109.54160 * 359.71916 * 12 10 9 14 14 C 1.34212 * 110.52939 * 0.46024 * 13 12 10 15 15 C 1.46179 * 126.11684 * 179.80862 * 14 13 12 16 16 C 1.38389 * 126.01906 * 324.69179 * 15 14 13 17 17 C 1.39852 * 106.69024 * 180.02562 * 16 15 14 18 18 C 1.36555 * 107.15575 * 359.97438 * 17 16 15 19 19 N 1.38118 * 125.59231 * 179.97438 * 18 17 16 20 20 O 1.34353 * 108.81316 * 0.02562 * 18 17 16 21 21 H 0.96999 * 119.99605 * 0.02562 * 1 2 3 22 22 H 1.08006 * 126.65056 * 359.76071 * 16 15 14 23 23 H 1.08001 * 126.42088 * 179.97438 * 17 16 15 24 24 H 0.96997 * 119.99742 * 179.97438 * 19 18 17 25 25 H 0.97003 * 119.99866 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3856 2.1071 -1.3948 5 1 1.4972 2.6201 0.8025 6 1 3.5894 1.4121 0.5923 7 6 2.0090 -1.2122 0.0005 8 1 3.0844 -1.2148 0.0996 9 6 1.3176 -2.4165 -0.1270 10 7 -0.0498 -2.5973 -0.1238 11 1 -0.7259 -1.9078 -0.0321 12 7 -0.2709 -3.9724 -0.2788 13 7 0.8565 -4.5808 -0.3750 14 6 1.8717 -3.7075 -0.2860 15 6 3.2956 -4.0322 -0.3487 16 6 3.8928 -5.1744 0.1551 17 6 5.2593 -5.0696 -0.1238 18 6 5.4471 -3.8861 -0.7784 19 7 6.6586 -3.4015 -1.2315 20 8 4.2604 -3.2697 -0.9085 21 1 -0.4849 0.8401 -0.0004 22 1 3.3999 -5.9869 0.6682 23 1 6.0227 -5.7898 0.1310 24 1 6.6987 -2.5471 -1.6890 25 1 7.4692 -3.9160 -1.0929 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282484.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = 78.891117 kcal Electronic energy + Delta-G solvation = -14252.903863 eV Core-core repulsion = 11655.035292 eV Total energy + Delta-G solvation = -2597.868571 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.41519 -39.56481 -34.39444 -34.25883 -32.02982 -30.78388 -30.10596 -26.99529 -25.03691 -21.68160 -21.05519 -20.53391 -19.21490 -18.13599 -16.97409 -16.13520 -15.70858 -15.35897 -15.05242 -14.00300 -13.47843 -13.33411 -12.11780 -12.03664 -12.02740 -11.71420 -11.61200 -11.22653 -10.77040 -10.61807 -10.04878 -9.93920 -9.44543 -9.00911 -8.77486 -7.92141 -7.41870 -6.41325 -4.91170 2.48894 2.72348 2.84033 2.91047 3.12628 3.25249 3.45382 3.59207 4.13789 4.55340 4.77547 4.99922 5.78728 5.97264 6.48234 6.52898 6.61302 6.72020 6.78950 7.00396 7.29906 7.43364 7.64959 7.79464 7.94503 8.07227 8.27887 8.39422 9.09552 9.64113 10.00132 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.011855 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.118763 B = 2361.377083 C = 3453.714413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.070 3.930 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.410 4.410 8 H 0.107 0.893 9 C 0.262 3.738 10 N -0.510 5.510 11 H 0.443 0.557 12 N -0.175 5.175 13 N -0.213 5.213 14 C -0.134 4.134 15 C 0.109 3.891 16 C -0.193 4.193 17 C -0.282 4.282 18 C 0.237 3.763 19 N -0.846 5.846 20 O -0.183 6.183 21 H 0.298 0.702 22 H 0.139 0.861 23 H 0.133 0.867 24 H 0.397 0.603 25 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.887 1.988 -0.564 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.150 4.150 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.447 4.447 8 H 0.125 0.875 9 C 0.133 3.867 10 N -0.235 5.235 11 H 0.296 0.704 12 N -0.152 5.152 13 N -0.084 5.084 14 C -0.275 4.275 15 C 0.056 3.944 16 C -0.215 4.215 17 C -0.308 4.308 18 C 0.085 3.915 19 N -0.399 5.399 20 O -0.077 6.077 21 H 0.109 0.891 22 H 0.157 0.843 23 H 0.151 0.849 24 H 0.225 0.775 25 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.379 1.158 -0.785 7.510 hybrid contribution 1.014 2.078 0.004 2.312 sum 8.393 3.236 -0.781 9.029 Atomic orbital electron populations 1.68941 1.08120 1.31393 1.36059 1.26226 0.95002 1.02912 0.90814 0.85700 0.80233 0.78007 0.79558 1.18860 1.19657 1.17852 1.18950 0.96341 0.87855 1.41547 0.87541 1.19282 0.83251 0.93737 0.90400 1.48413 1.06626 1.07765 1.60680 0.70387 1.81078 1.15453 0.87016 1.31695 1.73693 0.96040 1.28698 1.09941 1.18346 0.88268 0.89821 1.31086 1.18801 0.85197 0.90251 1.00104 1.21473 0.92632 0.99835 1.07535 1.20581 0.97393 0.98971 1.13890 1.18520 0.80903 0.91341 1.00706 1.40838 1.03746 1.26465 1.68832 1.83969 1.14452 1.45202 1.64092 0.89064 0.84292 0.84897 0.77498 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.70 10.83 55.55 0.60 -18.10 15 2 C 0.07 1.58 5.49 -17.29 -0.09 1.49 15 3 Si 0.94 17.07 29.57 -169.99 -5.03 12.04 15 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 7 C -0.41 -10.32 9.05 -38.48 -0.35 -10.67 15 8 H 0.11 2.61 7.21 -52.49 -0.38 2.23 15 9 C 0.26 7.08 6.84 -83.47 -0.57 6.51 15 10 N -0.51 -13.53 7.16 32.67 0.23 -13.29 15 11 H 0.44 11.17 6.50 -182.57 -1.19 9.98 15 12 N -0.17 -4.76 13.81 60.35 0.83 -3.93 15 13 N -0.21 -5.81 12.31 33.43 0.41 -5.40 15 14 C -0.13 -3.59 7.09 -82.44 -0.58 -4.17 15 15 C 0.11 2.63 6.95 -36.34 -0.25 2.38 15 16 C -0.19 -4.14 10.91 -38.92 -0.42 -4.56 15 17 C -0.28 -5.18 10.90 -39.59 -0.43 -5.62 15 18 C 0.24 4.35 8.45 -15.32 -0.13 4.22 15 19 N -0.85 -10.87 9.05 30.79 0.28 -10.59 15 20 O -0.18 -4.09 10.03 3.30 0.03 -4.06 15 21 H 0.30 6.07 8.30 -40.82 -0.34 5.73 15 22 H 0.14 2.83 8.06 -52.48 -0.42 2.41 15 23 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 24 H 0.40 4.49 8.95 -40.82 -0.37 4.12 15 25 H 0.42 3.94 8.94 -40.82 -0.37 3.58 15 LS Contribution 235.77 15.07 3.55 3.55 Total: -1.00 -29.25 235.77 -4.19 -33.44 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -2.28 Total: 16.76 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.84 Total: -10.43 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 2.36 Total: -51.31 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.03 Total: -4.06 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.25 -4.19 -33.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282484.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.334 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds