Wall clock time and date at job start Mon Mar 30 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46682 * 264.82924 * 3 2 1 5 5 H 1.48504 * 109.47197 * 24.82509 * 3 2 1 6 6 H 1.48494 * 109.47053 * 144.83172 * 3 2 1 7 7 C 1.37872 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00402 * 4.90541 * 7 2 1 9 9 C 1.50706 * 119.99897 * 184.90751 * 7 2 1 10 10 H 1.08994 * 109.69429 * 334.99323 * 9 7 2 11 11 C 1.53402 * 109.69820 * 95.55287 * 9 7 2 12 12 O 1.42804 * 108.37821 * 184.38353 * 11 9 7 13 13 C 1.35852 * 117.89977 * 310.87243 * 12 11 9 14 14 C 1.39054 * 118.44761 * 196.92708 * 13 12 11 15 15 C 1.38454 * 120.17987 * 180.43111 * 14 13 12 16 16 O 1.35902 * 120.08181 * 180.02562 * 15 14 13 17 17 C 1.38797 * 119.83644 * 359.97438 * 15 14 13 18 18 C 1.37999 * 119.92559 * 359.92740 * 17 15 14 19 19 C 1.38429 * 121.80276 * 17.22103 * 13 12 11 20 20 C 1.50789 * 121.37566 * 359.47047 * 19 13 12 21 21 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.68701 * 304.15415 * 11 9 7 23 23 H 1.09000 * 109.68351 * 64.71323 * 11 9 7 24 24 H 1.08008 * 119.91263 * 0.43483 * 14 13 12 25 25 H 0.96698 * 114.00232 * 269.97993 * 16 15 14 26 26 H 1.07997 * 120.03877 * 179.90952 * 17 15 14 27 27 H 1.08000 * 119.80681 * 180.02562 * 18 17 15 28 28 H 1.08997 * 109.43501 * 257.79318 * 20 19 13 29 29 H 1.08999 * 109.44014 * 137.92614 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6059 1.9833 -1.3944 5 1 1.3961 2.6819 0.5878 6 1 3.4878 1.4743 0.8064 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1277 -0.0790 9 6 3.5075 -1.1963 0.1122 10 1 3.9044 -0.2493 -0.2534 11 6 3.9168 -1.3975 1.5768 12 8 5.3383 -1.2927 1.6655 13 6 6.0847 -2.0116 0.7871 14 6 7.4316 -2.2103 1.0698 15 6 8.2277 -2.9298 0.1949 16 8 9.5438 -3.1232 0.4734 17 6 7.6782 -3.4540 -0.9668 18 6 6.3408 -3.2579 -1.2452 19 6 5.5411 -2.5387 -0.3718 20 6 4.0842 -2.3500 -0.7120 21 1 -0.4850 0.8400 -0.0004 22 1 3.4521 -0.6308 2.1967 23 1 3.6005 -2.3846 1.9141 24 1 7.8580 -1.8022 1.9744 25 1 10.1252 -2.4343 0.1236 26 1 8.2965 -4.0146 -1.6523 27 1 5.9151 -3.6670 -2.1495 28 1 3.5376 -3.2656 -0.4863 29 1 3.9861 -2.1221 -1.7733 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:24 Heat of formation + Delta-G solvation = -68.555340 kcal Electronic energy + Delta-G solvation = -14591.602562 eV Core-core repulsion = 12058.587825 eV Total energy + Delta-G solvation = -2533.014737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.23416 -38.29136 -35.80544 -34.29802 -32.02577 -29.98396 -29.48486 -25.20972 -24.84858 -22.53807 -21.79185 -19.26954 -18.31509 -17.25638 -16.23814 -16.13017 -15.33353 -14.52322 -14.42481 -14.18499 -13.56908 -13.36926 -13.11701 -12.70305 -12.34029 -11.97430 -11.58139 -11.08906 -10.94035 -10.62708 -10.45966 -9.98489 -9.84706 -9.65490 -9.24495 -8.68838 -8.36359 -7.71389 -6.23906 -4.26740 1.46046 1.67610 3.20707 3.29867 3.33604 3.80294 3.85487 4.29220 4.53528 5.02358 5.11216 5.31587 5.37232 5.64786 5.73469 5.88335 6.06462 6.13946 6.28056 6.38683 6.39217 6.53574 6.64410 6.77198 6.94949 7.00491 7.10487 7.51777 7.73458 7.99141 8.34880 8.80417 9.37635 10.88226 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050809 B = 0.007855 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.947872 B = 3563.791608 C = 3750.656013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.078 0.922 9 C -0.017 4.017 10 H 0.045 0.955 11 C 0.060 3.940 12 O -0.329 6.329 13 C 0.158 3.842 14 C -0.186 4.186 15 C 0.121 3.879 16 O -0.500 6.500 17 C -0.185 4.185 18 C -0.074 4.074 19 C -0.157 4.157 20 C -0.067 4.067 21 H 0.267 0.733 22 H 0.100 0.900 23 H 0.057 0.943 24 H 0.130 0.870 25 H 0.386 0.614 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.073 0.927 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.656 -3.165 -1.009 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.036 4.036 10 H 0.063 0.937 11 C -0.014 4.014 12 O -0.243 6.243 13 C 0.112 3.888 14 C -0.206 4.206 15 C 0.077 3.923 16 O -0.310 6.310 17 C -0.204 4.204 18 C -0.093 4.093 19 C -0.158 4.158 20 C -0.104 4.104 21 H 0.077 0.923 22 H 0.118 0.882 23 H 0.075 0.925 24 H 0.148 0.852 25 H 0.242 0.758 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.092 0.908 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.310 -3.421 -0.562 13.754 hybrid contribution 0.368 1.245 -0.360 1.347 sum 13.678 -2.176 -0.921 13.881 Atomic orbital electron populations 1.69891 1.06334 1.27381 1.49195 1.25087 0.94740 0.99091 0.93808 0.86908 0.80372 0.83535 0.79210 1.19911 1.21259 1.18617 1.20815 0.88007 0.94947 1.51811 0.90400 1.19775 0.97885 0.95040 0.90897 0.93713 1.23791 0.74249 1.01924 1.01451 1.85901 1.21710 1.63284 1.53387 1.18542 0.90444 0.91089 0.88751 1.20717 0.92698 1.04710 1.02442 1.17982 0.83809 0.97316 0.93197 1.84802 1.14774 1.51548 1.79852 1.21150 0.96220 1.05335 0.97706 1.20811 0.92701 0.96954 0.98795 1.20434 0.98723 1.01786 0.94862 1.20652 0.88191 1.00488 1.01086 0.92311 0.88151 0.92479 0.85236 0.75845 0.85899 0.85583 0.90846 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.31 15 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.87 20.79 26.99 -169.99 -4.59 16.20 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.26 -6.08 6.82 56.52 0.39 -5.69 15 7 C -0.52 -13.74 8.86 -34.44 -0.31 -14.05 15 8 H 0.08 2.23 8.06 -52.48 -0.42 1.80 15 9 C -0.02 -0.38 1.98 -91.52 -0.18 -0.56 15 10 H 0.04 1.06 5.31 -51.93 -0.28 0.78 15 11 C 0.06 1.27 6.31 37.37 0.24 1.51 15 12 O -0.33 -6.78 10.27 -19.28 -0.20 -6.98 15 13 C 0.16 3.00 6.47 -39.21 -0.25 2.75 15 14 C -0.19 -3.10 9.87 -39.20 -0.39 -3.48 15 15 C 0.12 1.80 6.70 -39.30 -0.26 1.54 15 16 O -0.50 -6.25 13.50 -19.43 -0.26 -6.51 15 17 C -0.19 -2.64 9.99 -39.46 -0.39 -3.03 15 18 C -0.07 -1.14 9.66 -39.55 -0.38 -1.53 15 19 C -0.16 -2.87 5.75 -104.39 -0.60 -3.47 15 20 C -0.07 -1.33 5.18 -27.80 -0.14 -1.47 15 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.10 2.13 8.14 -51.93 -0.42 1.71 15 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.13 1.99 8.06 -52.48 -0.42 1.57 15 25 H 0.39 2.84 9.06 45.56 0.41 3.25 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 28 H 0.07 1.43 8.09 -51.93 -0.42 1.01 15 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -29.98 249.42 -5.68 -35.66 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -2.39 Total: 2.98 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.77 Total: -19.81 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.77 Total: -25.31 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.46 Total: -13.49 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.59 Total: 16.20 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.98 -5.68 -35.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.891 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds