Wall clock time and date at job start Mon Mar 30 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46682 * 264.82924 * 3 2 1 5 5 H 1.48504 * 109.47197 * 24.82509 * 3 2 1 6 6 H 1.48494 * 109.47053 * 144.83172 * 3 2 1 7 7 C 1.37872 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00402 * 4.90541 * 7 2 1 9 9 C 1.50706 * 119.99897 * 184.90751 * 7 2 1 10 10 H 1.08994 * 109.69429 * 334.99323 * 9 7 2 11 11 C 1.53402 * 109.69820 * 95.55287 * 9 7 2 12 12 O 1.42804 * 108.37821 * 184.38353 * 11 9 7 13 13 C 1.35852 * 117.89977 * 310.87243 * 12 11 9 14 14 C 1.39054 * 118.44761 * 196.92708 * 13 12 11 15 15 C 1.38454 * 120.17987 * 180.43111 * 14 13 12 16 16 O 1.35902 * 120.08181 * 180.02562 * 15 14 13 17 17 C 1.38797 * 119.83644 * 359.97438 * 15 14 13 18 18 C 1.37999 * 119.92559 * 359.92740 * 17 15 14 19 19 C 1.38429 * 121.80276 * 17.22103 * 13 12 11 20 20 C 1.50789 * 121.37566 * 359.47047 * 19 13 12 21 21 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.68701 * 304.15415 * 11 9 7 23 23 H 1.09000 * 109.68351 * 64.71323 * 11 9 7 24 24 H 1.08008 * 119.91263 * 0.43483 * 14 13 12 25 25 H 0.96698 * 114.00232 * 269.97993 * 16 15 14 26 26 H 1.07997 * 120.03877 * 179.90952 * 17 15 14 27 27 H 1.08000 * 119.80681 * 180.02562 * 18 17 15 28 28 H 1.08997 * 109.43501 * 257.79318 * 20 19 13 29 29 H 1.08999 * 109.44014 * 137.92614 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6059 1.9833 -1.3944 5 1 1.3961 2.6819 0.5878 6 1 3.4878 1.4743 0.8064 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1277 -0.0790 9 6 3.5075 -1.1963 0.1122 10 1 3.9044 -0.2493 -0.2534 11 6 3.9168 -1.3975 1.5768 12 8 5.3383 -1.2927 1.6655 13 6 6.0847 -2.0116 0.7871 14 6 7.4316 -2.2103 1.0698 15 6 8.2277 -2.9298 0.1949 16 8 9.5438 -3.1232 0.4734 17 6 7.6782 -3.4540 -0.9668 18 6 6.3408 -3.2579 -1.2452 19 6 5.5411 -2.5387 -0.3718 20 6 4.0842 -2.3500 -0.7120 21 1 -0.4850 0.8400 -0.0004 22 1 3.4521 -0.6308 2.1967 23 1 3.6005 -2.3846 1.9141 24 1 7.8580 -1.8022 1.9744 25 1 10.1252 -2.4343 0.1236 26 1 8.2965 -4.0146 -1.6523 27 1 5.9151 -3.6670 -2.1495 28 1 3.5376 -3.2656 -0.4863 29 1 3.9861 -2.1221 -1.7733 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:24 Heat of formation + Delta-G solvation = -89.411184 kcal Electronic energy + Delta-G solvation = -14592.506939 eV Core-core repulsion = 12058.587825 eV Total energy + Delta-G solvation = -2533.919115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61875 -39.52482 -37.02765 -36.07280 -33.92417 -31.26500 -30.97267 -27.05996 -26.34905 -23.90893 -23.21520 -20.79858 -19.61059 -19.21942 -17.64480 -17.42058 -16.71767 -16.31094 -15.76416 -15.61793 -15.06454 -14.94891 -14.60457 -14.36715 -13.96703 -13.29788 -13.06239 -12.95046 -12.55232 -12.01253 -11.91482 -11.74107 -11.52069 -11.34000 -11.10042 -10.74956 -9.61743 -9.05871 -8.36193 -6.42529 0.24234 0.42701 1.31754 1.35352 1.45375 2.29139 2.37406 2.64595 2.97365 3.41828 3.86396 3.97087 4.08866 4.22130 4.29272 4.44264 4.52043 4.62858 4.75703 4.84390 4.99000 5.26376 5.28619 5.34317 5.42558 5.51456 5.59453 5.75776 6.19006 6.51746 6.66956 6.87930 7.24828 8.79565 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050809 B = 0.007855 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.947872 B = 3563.791608 C = 3750.656013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.043 0.957 9 C -0.018 4.018 10 H 0.038 0.962 11 C 0.067 3.933 12 O -0.339 6.339 13 C 0.126 3.874 14 C -0.194 4.194 15 C 0.134 3.866 16 O -0.502 6.502 17 C -0.175 4.175 18 C -0.069 4.069 19 C -0.177 4.177 20 C -0.061 4.061 21 H 0.269 0.731 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.137 0.863 25 H 0.412 0.588 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.067 0.933 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.600 -3.354 -1.738 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.062 0.938 9 C -0.038 4.038 10 H 0.057 0.943 11 C -0.007 4.007 12 O -0.253 6.253 13 C 0.081 3.919 14 C -0.213 4.213 15 C 0.090 3.910 16 O -0.315 6.315 17 C -0.193 4.193 18 C -0.087 4.087 19 C -0.178 4.178 20 C -0.098 4.098 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.272 0.728 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.086 0.914 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.297 -3.611 -1.301 16.743 hybrid contribution -0.408 1.166 -0.157 1.246 sum 15.889 -2.445 -1.458 16.142 Atomic orbital electron populations 1.70018 1.08045 1.28376 1.51304 1.25853 0.95367 1.02615 0.93679 0.85918 0.79294 0.79279 0.79622 1.19074 1.20927 1.17661 1.20999 0.90122 0.93579 1.50767 0.93834 1.19721 0.95291 0.96119 0.92630 0.94335 1.23469 0.75371 1.01831 1.00044 1.85863 1.20762 1.64383 1.54327 1.18861 0.91302 0.92555 0.89201 1.20883 0.91915 1.05186 1.03311 1.18038 0.84702 0.95718 0.92580 1.84746 1.13846 1.52759 1.80172 1.21496 0.95868 1.04264 0.97687 1.21065 0.93023 0.95796 0.98858 1.20335 0.97868 1.03797 0.95820 1.20472 0.89681 0.98889 1.00763 0.92163 0.88649 0.92386 0.84553 0.72797 0.82632 0.83207 0.91441 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.96 21.45 0.30 -56.13 15 2 C 0.02 1.33 5.47 84.65 0.46 1.80 15 3 Si 0.93 43.16 26.99 68.60 1.85 45.01 15 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.25 -11.20 6.82 99.48 0.68 -10.52 15 7 C -0.52 -28.17 8.86 25.60 0.23 -27.95 15 8 H 0.04 2.61 8.06 -2.91 -0.02 2.58 15 9 C -0.02 -0.85 1.98 -11.38 -0.02 -0.87 15 10 H 0.04 1.81 5.31 -2.39 -0.01 1.79 15 11 C 0.07 2.89 6.31 72.12 0.46 3.34 15 12 O -0.34 -13.81 10.27 -91.89 -0.94 -14.76 15 13 C 0.13 4.63 6.47 22.51 0.15 4.78 15 14 C -0.19 -5.99 9.87 22.52 0.22 -5.76 15 15 C 0.13 3.48 6.70 22.46 0.15 3.63 15 16 O -0.50 -10.32 13.50 -92.45 -1.25 -11.57 15 17 C -0.17 -4.20 9.99 22.35 0.22 -3.98 15 18 C -0.07 -1.91 9.66 22.29 0.22 -1.70 15 19 C -0.18 -6.20 5.75 -19.71 -0.11 -6.31 15 20 C -0.06 -2.39 5.18 29.90 0.15 -2.24 15 21 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 22 H 0.10 4.09 8.14 -2.39 -0.02 4.07 15 23 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.14 3.91 8.06 -2.91 -0.02 3.89 15 25 H 0.41 4.11 9.06 -74.06 -0.67 3.44 15 26 H 0.16 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.15 3.35 8.06 -2.91 -0.02 3.33 15 28 H 0.07 2.66 8.09 -2.39 -0.02 2.64 15 29 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 Total: -1.00 -64.88 249.42 2.55 -62.33 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.47 Total: 10.39 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 2.12 Total: -35.26 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.30 Total: -56.13 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -2.19 Total: -26.33 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.85 Total: 45.01 kcal Total: -64.88 2.55 -62.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.081 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds