Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00312 * 2 1 4 4 H 1.48501 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46921 * 299.99845 * 3 2 1 6 6 H 1.48502 * 109.47147 * 59.99518 * 3 2 1 7 7 C 1.37877 * 119.99321 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99523 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00671 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.72475 * 59.42215 * 9 7 2 11 11 C 1.53409 * 109.69894 * 298.84242 * 9 7 2 12 12 O 1.42808 * 108.39410 * 175.59236 * 11 9 7 13 13 C 1.35860 * 117.87591 * 49.16065 * 12 11 9 14 14 C 1.39050 * 118.45000 * 163.04359 * 13 12 11 15 15 C 1.38458 * 120.17310 * 179.49801 * 14 13 12 16 16 O 1.35896 * 120.07866 * 180.02562 * 15 14 13 17 17 C 1.38798 * 119.84330 * 0.30542 * 15 14 13 18 18 C 1.38011 * 119.91759 * 359.52909 * 17 15 14 19 19 C 1.38428 * 121.79641 * 342.71957 * 13 12 11 20 20 C 1.50793 * 121.37891 * 0.64578 * 19 13 12 21 21 H 0.97002 * 119.99443 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.67871 * 295.30858 * 11 9 7 23 23 H 1.09000 * 109.67885 * 55.82247 * 11 9 7 24 24 H 1.08000 * 119.91506 * 359.51942 * 14 13 12 25 25 H 0.96700 * 114.00170 * 90.00156 * 16 15 14 26 26 H 1.07997 * 120.03979 * 179.79431 * 17 15 14 27 27 H 1.08000 * 119.79806 * 180.28057 * 18 17 15 28 28 H 1.09000 * 109.43715 * 102.08478 * 20 19 13 29 29 H 1.09005 * 109.43600 * 221.99979 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6153 -2.5570 -0.8831 11 6 0.3885 -2.5984 1.2654 12 8 -0.3894 -3.7935 1.1878 13 6 0.2516 -4.9494 0.8735 14 6 -0.3889 -6.1550 1.1377 15 6 0.2272 -7.3541 0.8222 16 8 -0.4007 -8.5312 1.0807 17 6 1.4902 -7.3512 0.2465 18 6 2.1233 -6.1537 -0.0183 19 6 1.5101 -4.9520 0.2970 20 6 2.2409 -3.6666 0.0012 21 1 -0.4849 0.8401 -0.0004 22 1 1.0305 -2.6349 2.1454 23 1 -0.2716 -1.7333 1.3283 24 1 -1.3697 -6.1560 1.5898 25 1 -0.9521 -8.8509 0.3535 26 1 1.9751 -8.2847 0.0022 27 1 3.1041 -6.1537 -0.4704 28 1 3.0006 -3.4974 0.7642 29 1 2.7181 -3.7373 -0.9763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -70.291895 kcal Electronic energy + Delta-G solvation = -14564.582161 eV Core-core repulsion = 12031.492121 eV Total energy + Delta-G solvation = -2533.090040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03308 -38.11247 -35.64144 -34.24967 -31.87369 -29.81964 -28.96170 -25.14653 -24.56948 -22.43914 -21.85254 -19.24515 -18.13669 -16.77638 -15.98603 -15.89802 -15.20335 -14.61531 -14.25525 -13.98837 -13.54207 -13.07625 -13.03685 -12.40033 -12.09404 -11.80591 -11.29178 -11.07329 -10.67977 -10.60932 -10.43304 -10.14956 -9.83039 -9.42553 -8.99367 -8.58110 -8.21126 -7.52546 -6.19776 -4.26723 1.58933 1.82505 3.20650 3.29424 3.32916 3.98052 4.05959 4.30420 4.70544 5.12009 5.24448 5.41710 5.51787 5.78003 5.90706 6.21469 6.22637 6.31042 6.52085 6.58642 6.67318 6.76014 6.81333 6.99243 7.12895 7.40474 7.59662 7.78007 7.84466 8.10005 8.37172 8.77695 9.39763 10.87821 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.067264 B = 0.007013 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.169949 B = 3991.614972 C = 4325.059037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.016 3.984 10 H 0.041 0.959 11 C 0.060 3.940 12 O -0.325 6.325 13 C 0.163 3.837 14 C -0.190 4.190 15 C 0.121 3.879 16 O -0.501 6.501 17 C -0.190 4.190 18 C -0.076 4.076 19 C -0.158 4.158 20 C -0.073 4.073 21 H 0.265 0.735 22 H 0.039 0.961 23 H 0.135 0.865 24 H 0.129 0.871 25 H 0.386 0.614 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.068 0.932 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 -10.201 0.060 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.081 0.919 9 C -0.003 4.003 10 H 0.059 0.941 11 C -0.013 4.013 12 O -0.238 6.238 13 C 0.116 3.884 14 C -0.209 4.209 15 C 0.077 3.923 16 O -0.311 6.311 17 C -0.209 4.209 18 C -0.094 4.094 19 C -0.159 4.159 20 C -0.110 4.110 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.152 0.848 24 H 0.147 0.853 25 H 0.241 0.759 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.949 -9.971 0.650 10.038 hybrid contribution 0.365 0.911 -0.492 1.098 sum 1.314 -9.061 0.158 9.157 Atomic orbital electron populations 1.69842 1.05969 1.27051 1.49996 1.25057 0.94975 0.99547 0.94553 0.86425 0.80076 0.83160 0.77752 1.19633 1.20839 1.20834 1.21090 0.93171 0.89710 1.51464 0.91909 1.19308 0.93600 0.92746 0.94632 0.94070 1.23638 0.96229 0.82723 0.98740 1.85973 1.38761 1.15374 1.83730 1.18645 0.90654 0.86736 0.92376 1.20726 1.02415 0.89817 1.07953 1.17982 0.91940 0.84245 0.98165 1.84792 1.65610 1.36471 1.44189 1.21096 0.96440 0.98337 1.05025 1.20781 0.99213 0.90980 0.98418 1.20347 0.95638 0.97023 1.02847 1.20688 0.98400 0.90908 1.00980 0.92507 0.94286 0.84767 0.85308 0.75930 0.86095 0.85879 0.91392 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.41 55.43 0.63 -23.85 15 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 15 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -13.55 8.53 -34.44 -0.29 -13.84 15 8 H 0.06 1.61 7.75 -52.48 -0.41 1.20 15 9 C 0.02 0.39 2.31 -91.53 -0.21 0.18 15 10 H 0.04 1.12 8.14 -51.92 -0.42 0.70 15 11 C 0.06 1.45 6.15 37.37 0.23 1.68 15 12 O -0.32 -7.45 10.27 -19.30 -0.20 -7.65 15 13 C 0.16 3.36 6.47 -39.21 -0.25 3.10 15 14 C -0.19 -3.42 9.87 -39.20 -0.39 -3.80 15 15 C 0.12 1.93 6.70 -39.29 -0.26 1.67 15 16 O -0.50 -6.74 13.50 -19.41 -0.26 -7.00 15 17 C -0.19 -2.90 9.99 -39.46 -0.39 -3.29 15 18 C -0.08 -1.24 9.66 -39.55 -0.38 -1.62 15 19 C -0.16 -3.08 5.75 -104.39 -0.60 -3.68 15 20 C -0.07 -1.51 5.13 -27.81 -0.14 -1.66 15 21 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.13 3.50 6.12 -51.93 -0.32 3.18 15 24 H 0.13 2.17 8.06 -52.49 -0.42 1.74 15 25 H 0.39 3.18 9.06 45.56 0.41 3.60 15 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.07 1.38 8.09 -51.93 -0.42 0.96 15 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -28.76 249.83 -6.28 -35.04 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.40 Total: 4.07 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.79 Total: -19.76 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.63 Total: -23.85 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.46 Total: -14.65 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.76 -6.28 -35.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.249 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds