Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00312 * 2 1 4 4 H 1.48501 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46921 * 299.99845 * 3 2 1 6 6 H 1.48502 * 109.47147 * 59.99518 * 3 2 1 7 7 C 1.37877 * 119.99321 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99523 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00671 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.72475 * 59.42215 * 9 7 2 11 11 C 1.53409 * 109.69894 * 298.84242 * 9 7 2 12 12 O 1.42808 * 108.39410 * 175.59236 * 11 9 7 13 13 C 1.35860 * 117.87591 * 49.16065 * 12 11 9 14 14 C 1.39050 * 118.45000 * 163.04359 * 13 12 11 15 15 C 1.38458 * 120.17310 * 179.49801 * 14 13 12 16 16 O 1.35896 * 120.07866 * 180.02562 * 15 14 13 17 17 C 1.38798 * 119.84330 * 0.30542 * 15 14 13 18 18 C 1.38011 * 119.91759 * 359.52909 * 17 15 14 19 19 C 1.38428 * 121.79641 * 342.71957 * 13 12 11 20 20 C 1.50793 * 121.37891 * 0.64578 * 19 13 12 21 21 H 0.97002 * 119.99443 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.67871 * 295.30858 * 11 9 7 23 23 H 1.09000 * 109.67885 * 55.82247 * 11 9 7 24 24 H 1.08000 * 119.91506 * 359.51942 * 14 13 12 25 25 H 0.96700 * 114.00170 * 90.00156 * 16 15 14 26 26 H 1.07997 * 120.03979 * 179.79431 * 17 15 14 27 27 H 1.08000 * 119.79806 * 180.28057 * 18 17 15 28 28 H 1.09000 * 109.43715 * 102.08478 * 20 19 13 29 29 H 1.09005 * 109.43600 * 221.99979 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6153 -2.5570 -0.8831 11 6 0.3885 -2.5984 1.2654 12 8 -0.3894 -3.7935 1.1878 13 6 0.2516 -4.9494 0.8735 14 6 -0.3889 -6.1550 1.1377 15 6 0.2272 -7.3541 0.8222 16 8 -0.4007 -8.5312 1.0807 17 6 1.4902 -7.3512 0.2465 18 6 2.1233 -6.1537 -0.0183 19 6 1.5101 -4.9520 0.2970 20 6 2.2409 -3.6666 0.0012 21 1 -0.4849 0.8401 -0.0004 22 1 1.0305 -2.6349 2.1454 23 1 -0.2716 -1.7333 1.3283 24 1 -1.3697 -6.1560 1.5898 25 1 -0.9521 -8.8509 0.3535 26 1 1.9751 -8.2847 0.0022 27 1 3.1041 -6.1537 -0.4704 28 1 3.0006 -3.4974 0.7642 29 1 2.7181 -3.7373 -0.9763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -89.409446 kcal Electronic energy + Delta-G solvation = -14565.411160 eV Core-core repulsion = 12031.492121 eV Total energy + Delta-G solvation = -2533.919039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53438 -39.47227 -36.98869 -36.09992 -33.67657 -31.21950 -30.56413 -27.06931 -26.21491 -23.95278 -23.32674 -20.83673 -19.51713 -18.69796 -17.52789 -17.37612 -16.64130 -16.41851 -15.71290 -15.56226 -15.06951 -14.73719 -14.47669 -14.16502 -13.76374 -13.19333 -12.93999 -12.88981 -12.42138 -12.25344 -11.93789 -11.64192 -11.60224 -11.22181 -10.86025 -10.57537 -9.59336 -9.00310 -8.21156 -6.35960 0.26380 0.46108 1.41293 1.43608 1.55318 2.37227 2.53353 2.67056 3.08849 3.45218 3.90665 4.03219 4.17476 4.31839 4.41839 4.50785 4.63698 4.78185 4.87323 4.99414 5.06658 5.33226 5.42711 5.45001 5.58993 5.62959 5.77352 5.79029 6.15733 6.63812 6.76192 6.88444 7.34335 8.86260 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.067264 B = 0.007013 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.169949 B = 3991.614972 C = 4325.059037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.014 3.986 10 H 0.002 0.998 11 C 0.072 3.928 12 O -0.345 6.345 13 C 0.125 3.875 14 C -0.200 4.200 15 C 0.135 3.865 16 O -0.501 6.501 17 C -0.177 4.177 18 C -0.068 4.068 19 C -0.180 4.180 20 C -0.063 4.063 21 H 0.266 0.734 22 H 0.040 0.960 23 H 0.107 0.893 24 H 0.132 0.868 25 H 0.412 0.588 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.071 0.929 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -12.022 -0.179 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.085 0.915 9 C -0.005 4.005 10 H 0.021 0.979 11 C -0.002 4.002 12 O -0.259 6.259 13 C 0.079 3.921 14 C -0.219 4.219 15 C 0.090 3.910 16 O -0.315 6.315 17 C -0.195 4.195 18 C -0.086 4.086 19 C -0.180 4.180 20 C -0.100 4.100 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.125 0.875 24 H 0.150 0.850 25 H 0.272 0.728 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.089 0.911 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.374 -11.828 0.396 12.071 hybrid contribution -0.140 1.276 -0.433 1.355 sum 2.234 -10.552 -0.037 10.786 Atomic orbital electron populations 1.69985 1.07454 1.27847 1.50681 1.25880 0.95726 1.02977 0.94116 0.85390 0.79118 0.78847 0.77643 1.18669 1.20673 1.20475 1.21426 0.93506 0.90723 1.51438 0.91521 1.19216 0.93945 0.94170 0.93128 0.97943 1.23242 0.95475 0.82920 0.98555 1.85896 1.39272 1.15907 1.84839 1.19007 0.91966 0.86397 0.94695 1.20887 1.02751 0.89872 1.08373 1.18024 0.92209 0.84213 0.96551 1.84734 1.66016 1.34918 1.45805 1.21485 0.95723 0.99310 1.02971 1.21075 1.00169 0.89999 0.97363 1.20346 0.95651 0.97637 1.04407 1.20516 0.97500 0.90317 1.01708 0.92470 0.94165 0.87505 0.85004 0.72842 0.82419 0.82925 0.91084 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 11.41 21.45 0.24 -52.09 15 2 C 0.01 0.65 5.30 84.65 0.45 1.10 15 3 Si 0.97 42.15 29.54 68.60 2.03 44.18 15 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.53 -28.52 8.53 25.60 0.22 -28.31 15 8 H 0.07 3.43 7.75 -2.91 -0.02 3.40 15 9 C 0.01 0.72 2.31 -11.38 -0.03 0.69 15 10 H 0.00 0.14 8.14 -2.38 -0.02 0.12 15 11 C 0.07 3.65 6.15 72.12 0.44 4.10 15 12 O -0.34 -16.52 10.27 -91.98 -0.94 -17.46 15 13 C 0.13 5.19 6.47 22.51 0.15 5.34 15 14 C -0.20 -6.99 9.87 22.52 0.22 -6.77 15 15 C 0.13 3.87 6.70 22.46 0.15 4.02 15 16 O -0.50 -11.48 13.50 -92.38 -1.25 -12.73 15 17 C -0.18 -4.62 9.99 22.35 0.22 -4.39 15 18 C -0.07 -2.02 9.66 22.29 0.22 -1.80 15 19 C -0.18 -6.88 5.75 -19.72 -0.11 -6.99 15 20 C -0.06 -2.64 5.13 29.90 0.15 -2.49 15 21 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 22 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.11 5.93 6.12 -2.39 -0.01 5.92 15 24 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 25 H 0.41 5.04 9.06 -74.06 -0.67 4.37 15 26 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 27 H 0.15 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.07 2.85 8.09 -2.39 -0.02 2.84 15 29 H 0.08 3.00 8.14 -2.38 -0.02 2.98 15 Total: -1.00 -63.21 249.83 2.65 -60.56 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.49 Total: 13.05 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 2.08 Total: -35.49 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.09 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.19 Total: -30.20 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.21 2.65 -60.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.851 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds