Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48497 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 300.00139 * 3 2 1 6 6 H 1.48502 * 109.47141 * 59.99813 * 3 2 1 7 7 C 1.40160 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.39752 * 119.99567 * 359.97438 * 7 2 1 10 10 C 1.39555 * 126.20038 * 180.02562 * 9 7 2 11 11 C 1.39756 * 106.45449 * 179.73310 * 10 9 7 12 12 C 1.35661 * 107.35026 * 0.02562 * 11 10 9 13 13 C 1.50706 * 125.39107 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.50963 * 1.29989 * 13 12 11 15 15 C 1.54983 * 110.56836 * 124.21111 * 13 12 11 16 16 C 1.54889 * 102.33132 * 155.65073 * 15 13 12 17 17 C 1.51839 * 104.43471 * 322.37677 * 16 15 13 18 18 O 1.20762 * 126.34443 * 203.76892 * 17 16 15 19 19 C 1.51446 * 107.31902 * 23.78936 * 17 16 15 20 20 O 1.34235 * 109.21971 * 359.97438 * 12 11 10 21 21 H 0.96997 * 120.00405 * 359.97438 * 1 2 3 22 22 H 1.07997 * 126.77219 * 359.70925 * 10 9 7 23 23 H 1.08000 * 126.32548 * 180.02562 * 11 10 9 24 24 H 1.08999 * 110.83897 * 273.86316 * 15 13 12 25 25 H 1.08999 * 110.83339 * 37.44282 * 15 13 12 26 26 H 1.09002 * 110.44245 * 203.63878 * 16 15 13 27 27 H 1.08998 * 110.54782 * 81.17201 * 16 15 13 28 28 H 1.08996 * 109.98430 * 240.29606 * 19 17 16 29 29 H 1.08996 * 109.98709 * 118.98959 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7020 1.3465 0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0089 -1.2138 -0.0005 8 1 3.0888 -1.2138 -0.0010 9 6 1.3101 -2.4241 -0.0005 10 6 1.8732 -3.7010 -0.0005 11 6 0.8066 -4.6040 0.0057 12 6 -0.3388 -3.8771 0.0086 13 6 -1.7341 -4.4468 0.0160 14 1 -1.7017 -5.5360 0.0419 15 6 -2.5415 -3.8942 1.2179 16 6 -4.0040 -4.0406 0.7293 17 6 -3.9446 -3.7016 -0.7496 18 8 -4.8593 -3.3025 -1.4296 19 6 -2.5260 -3.9571 -1.2141 20 8 -0.0328 -2.5701 0.0051 21 1 -0.4850 0.8400 0.0004 22 1 2.9256 -3.9434 -0.0049 23 1 0.8806 -5.6814 0.0078 24 1 -2.3689 -4.4957 2.1104 25 1 -2.2969 -2.8479 1.4011 26 1 -4.6529 -3.3399 1.2547 27 1 -4.3545 -5.0628 0.8718 28 1 -2.0876 -3.0354 -1.5966 29 1 -2.5202 -4.7227 -1.9898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299408.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = -54.747532 kcal Electronic energy + Delta-G solvation = -14561.779235 eV Core-core repulsion = 12029.363250 eV Total energy + Delta-G solvation = -2532.415986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43664 -39.17033 -35.88244 -33.61911 -31.09611 -29.75235 -28.27451 -26.71403 -23.92224 -20.93702 -19.88678 -19.21287 -18.75945 -17.40128 -15.89110 -15.71599 -15.10329 -14.40634 -14.11364 -13.92221 -13.23443 -13.05178 -12.82370 -12.29599 -11.79238 -11.37453 -11.23579 -11.11509 -11.05932 -10.93015 -10.73295 -10.40034 -10.25435 -9.93488 -9.49265 -9.16697 -8.20236 -7.12578 -6.86296 -4.41508 2.22292 2.86803 3.03190 3.08759 3.47000 3.85977 4.05693 4.44225 4.75519 5.02957 5.20404 5.22807 5.34960 5.52791 5.72315 5.85300 5.94568 6.18274 6.24330 6.44400 6.53862 6.56847 6.74108 7.00839 7.17557 7.44698 7.63769 7.77082 8.02038 8.20354 8.59218 8.71953 9.28507 10.13118 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.008710 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.563373 B = 3213.756448 C = 3805.950663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.068 3.932 3 Si 0.920 3.080 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.446 4.446 8 H 0.102 0.898 9 C 0.210 3.790 10 C -0.400 4.400 11 C -0.156 4.156 12 C -0.156 4.156 13 C 0.022 3.978 14 H 0.088 0.912 15 C -0.114 4.114 16 C -0.183 4.183 17 C 0.374 3.626 18 O -0.462 6.462 19 C -0.181 4.181 20 O -0.152 6.152 21 H 0.283 0.717 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -4.190 1.671 5.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.153 4.153 3 Si 0.744 3.256 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.120 0.880 9 C 0.157 3.843 10 C -0.421 4.421 11 C -0.176 4.176 12 C -0.205 4.205 13 C 0.004 3.996 14 H 0.106 0.894 15 C -0.152 4.152 16 C -0.221 4.221 17 C 0.250 3.750 18 O -0.336 6.336 19 C -0.218 4.218 20 O -0.049 6.049 21 H 0.094 0.906 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.736 -3.647 1.311 6.120 hybrid contribution 0.668 0.522 0.038 0.848 sum -4.068 -3.126 1.349 5.305 Atomic orbital electron populations 1.69766 1.07430 1.29524 1.33692 1.26106 0.95014 1.01761 0.92372 0.86044 0.80632 0.80215 0.78663 1.18235 1.19694 1.19696 1.18761 0.94523 0.87580 1.46696 0.88017 1.19592 0.78934 0.93953 0.91816 1.21277 0.97370 0.91996 1.31412 1.20790 0.92788 0.97515 1.06496 1.21156 0.93841 0.83103 1.22355 1.19895 0.88521 0.98143 0.93086 0.89380 1.22564 0.91379 1.03309 0.97940 1.22927 0.99868 1.03406 0.95887 1.25102 0.89181 0.70185 0.90512 1.90367 1.44115 1.35600 1.63565 1.22802 0.94286 1.04557 1.00182 1.84330 1.23955 1.23230 1.73344 0.90636 0.87206 0.87306 0.90704 0.89745 0.89462 0.88254 0.87339 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.44 12.01 55.56 0.67 -19.77 15 2 C 0.07 1.71 5.50 -17.27 -0.09 1.61 15 3 Si 0.92 18.48 29.56 -169.99 -5.03 13.46 15 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.45 -11.92 9.32 -38.29 -0.36 -12.28 15 8 H 0.10 2.56 7.85 -52.49 -0.41 2.15 15 9 C 0.21 5.81 6.79 -38.53 -0.26 5.55 15 10 C -0.40 -10.30 10.95 -38.52 -0.42 -10.73 15 11 C -0.16 -3.64 10.73 -39.94 -0.43 -4.07 15 12 C -0.16 -3.59 5.79 -35.23 -0.20 -3.79 15 13 C 0.02 0.39 3.34 -90.05 -0.30 0.08 15 14 H 0.09 1.30 8.12 -51.93 -0.42 0.88 15 15 C -0.11 -1.81 6.37 -24.69 -0.16 -1.97 15 16 C -0.18 -2.48 6.72 -26.32 -0.18 -2.66 15 17 C 0.37 6.20 7.88 -28.11 -0.22 5.98 15 18 O -0.46 -8.94 17.99 6.00 0.11 -8.83 15 19 C -0.18 -3.09 6.26 -26.85 -0.17 -3.26 15 20 O -0.15 -4.09 8.76 3.69 0.03 -4.05 15 21 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 22 H 0.11 2.67 8.06 -52.49 -0.42 2.25 15 23 H 0.11 2.18 8.06 -52.49 -0.42 1.76 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.58 7.96 -51.93 -0.41 1.17 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.11 2.19 7.73 -51.93 -0.40 1.79 15 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 15 LS Contribution 257.94 15.07 3.89 3.89 Total: -1.00 -29.67 257.94 -6.44 -36.11 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.32 Total: 4.73 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.79 Total: -25.53 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.67 Total: -19.77 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.14 Total: -12.88 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.67 -6.44 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299408.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.637 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds