Wall clock time and date at job start Mon Mar 30 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48497 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 300.00139 * 3 2 1 6 6 H 1.48502 * 109.47141 * 59.99813 * 3 2 1 7 7 C 1.40160 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.39752 * 119.99567 * 359.97438 * 7 2 1 10 10 C 1.39555 * 126.20038 * 180.02562 * 9 7 2 11 11 C 1.39756 * 106.45449 * 179.73310 * 10 9 7 12 12 C 1.35661 * 107.35026 * 0.02562 * 11 10 9 13 13 C 1.50706 * 125.39107 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.50963 * 1.29989 * 13 12 11 15 15 C 1.54983 * 110.56836 * 124.21111 * 13 12 11 16 16 C 1.54889 * 102.33132 * 155.65073 * 15 13 12 17 17 C 1.51839 * 104.43471 * 322.37677 * 16 15 13 18 18 O 1.20762 * 126.34443 * 203.76892 * 17 16 15 19 19 C 1.51446 * 107.31902 * 23.78936 * 17 16 15 20 20 O 1.34235 * 109.21971 * 359.97438 * 12 11 10 21 21 H 0.96997 * 120.00405 * 359.97438 * 1 2 3 22 22 H 1.07997 * 126.77219 * 359.70925 * 10 9 7 23 23 H 1.08000 * 126.32548 * 180.02562 * 11 10 9 24 24 H 1.08999 * 110.83897 * 273.86316 * 15 13 12 25 25 H 1.08999 * 110.83339 * 37.44282 * 15 13 12 26 26 H 1.09002 * 110.44245 * 203.63878 * 16 15 13 27 27 H 1.08998 * 110.54782 * 81.17201 * 16 15 13 28 28 H 1.08996 * 109.98430 * 240.29606 * 19 17 16 29 29 H 1.08996 * 109.98709 * 118.98959 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7020 1.3465 0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0089 -1.2138 -0.0005 8 1 3.0888 -1.2138 -0.0010 9 6 1.3101 -2.4241 -0.0005 10 6 1.8732 -3.7010 -0.0005 11 6 0.8066 -4.6040 0.0057 12 6 -0.3388 -3.8771 0.0086 13 6 -1.7341 -4.4468 0.0160 14 1 -1.7017 -5.5360 0.0419 15 6 -2.5415 -3.8942 1.2179 16 6 -4.0040 -4.0406 0.7293 17 6 -3.9446 -3.7016 -0.7496 18 8 -4.8593 -3.3025 -1.4296 19 6 -2.5260 -3.9571 -1.2141 20 8 -0.0328 -2.5701 0.0051 21 1 -0.4850 0.8400 0.0004 22 1 2.9256 -3.9434 -0.0049 23 1 0.8806 -5.6814 0.0078 24 1 -2.3689 -4.4957 2.1104 25 1 -2.2969 -2.8479 1.4011 26 1 -4.6529 -3.3399 1.2547 27 1 -4.3545 -5.0628 0.8718 28 1 -2.0876 -3.0354 -1.5966 29 1 -2.5202 -4.7227 -1.9898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261299408.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:18 Heat of formation + Delta-G solvation = -72.147939 kcal Electronic energy + Delta-G solvation = -14562.533774 eV Core-core repulsion = 12029.363250 eV Total energy + Delta-G solvation = -2533.170524 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.33300 -40.58179 -37.30128 -35.53062 -33.02745 -31.42480 -29.79841 -28.27346 -25.64697 -22.51738 -21.79982 -20.74460 -20.27104 -19.35268 -17.46525 -17.04444 -16.81353 -16.04219 -15.80614 -15.59584 -14.89103 -14.41128 -14.24633 -14.06815 -13.24356 -13.09339 -13.00234 -12.89712 -12.49818 -12.47257 -12.26326 -11.88232 -11.80211 -11.62619 -11.32021 -10.52243 -10.14545 -9.07264 -8.75240 -6.40478 0.90060 1.18668 1.37170 1.54732 1.68708 2.16932 2.18018 2.93155 3.22501 3.27491 3.65458 3.87454 4.02736 4.36013 4.43007 4.52486 4.67890 4.70867 4.89299 4.96061 4.98176 5.08893 5.22178 5.30129 5.37848 5.50759 5.71019 6.04904 6.34816 6.45743 6.66700 6.73214 7.32339 8.26681 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031611 B = 0.008710 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.563373 B = 3213.756448 C = 3805.950663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.023 3.977 3 Si 1.001 2.999 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.167 3.833 10 C -0.422 4.422 11 C -0.169 4.169 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.130 0.870 15 C -0.110 4.110 16 C -0.164 4.164 17 C 0.375 3.625 18 O -0.493 6.493 19 C -0.180 4.180 20 O -0.176 6.176 21 H 0.290 0.710 22 H 0.114 0.886 23 H 0.145 0.855 24 H 0.102 0.898 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.143 0.857 28 H 0.068 0.932 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -5.086 2.341 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.174 1.174 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.511 4.511 8 H 0.123 0.877 9 C 0.114 3.886 10 C -0.443 4.443 11 C -0.188 4.188 12 C -0.200 4.200 13 C 0.002 3.998 14 H 0.148 0.852 15 C -0.148 4.148 16 C -0.201 4.201 17 C 0.254 3.746 18 O -0.370 6.370 19 C -0.217 4.217 20 O -0.074 6.074 21 H 0.101 0.899 22 H 0.132 0.868 23 H 0.163 0.837 24 H 0.120 0.880 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.447 -4.566 1.988 7.380 hybrid contribution 0.860 0.691 -0.186 1.119 sum -4.587 -3.875 1.802 6.269 Atomic orbital electron populations 1.69845 1.09149 1.30965 1.34355 1.27101 0.95816 1.05297 0.91083 0.84868 0.79267 0.74832 0.79051 1.17410 1.18924 1.18657 1.19130 0.95023 0.88659 1.48298 0.87654 1.20102 0.79598 0.95221 0.93650 1.21572 0.98376 0.92304 1.32040 1.21160 0.91888 0.99126 1.06592 1.22276 0.96612 0.81819 1.19289 1.20214 0.85516 1.00140 0.93900 0.85237 1.22485 0.92641 1.01283 0.98387 1.22878 0.98345 1.06182 0.92732 1.25368 0.88200 0.69017 0.91982 1.90364 1.44810 1.37108 1.64728 1.22750 0.94739 1.03411 1.00824 1.84313 1.23895 1.25614 1.73604 0.89921 0.86786 0.83701 0.87970 0.93702 0.88323 0.83919 0.91386 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.30 12.01 21.87 0.26 -44.03 15 2 C 0.02 1.21 5.50 85.31 0.47 1.68 15 3 Si 1.00 38.20 29.56 68.60 2.03 40.23 15 4 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 5 H -0.26 -9.71 7.11 99.48 0.71 -9.01 15 6 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 7 C -0.48 -26.73 9.32 23.10 0.22 -26.52 15 8 H 0.11 5.50 7.85 -2.91 -0.02 5.48 15 9 C 0.17 9.58 6.79 22.95 0.16 9.73 15 10 C -0.42 -22.22 10.95 22.95 0.25 -21.97 15 11 C -0.17 -7.71 10.73 22.04 0.24 -7.48 15 12 C -0.15 -6.94 5.79 25.09 0.15 -6.79 15 13 C 0.02 0.67 3.34 -10.43 -0.03 0.63 15 14 H 0.13 3.22 8.12 -2.38 -0.02 3.20 15 15 C -0.11 -3.23 6.37 31.92 0.20 -3.03 15 16 C -0.16 -3.87 6.72 30.86 0.21 -3.66 15 17 C 0.38 11.81 7.88 29.70 0.23 12.05 15 18 O -0.49 -18.60 17.99 -1.46 -0.03 -18.63 15 19 C -0.18 -5.95 6.26 30.52 0.19 -5.76 15 20 O -0.18 -9.85 8.76 -9.71 -0.09 -9.93 15 21 H 0.29 14.17 8.30 -92.71 -0.77 13.40 15 22 H 0.11 5.68 8.06 -2.91 -0.02 5.66 15 23 H 0.15 5.42 8.06 -2.91 -0.02 5.39 15 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.04 1.67 7.96 -2.39 -0.02 1.65 15 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.14 2.26 8.14 -2.39 -0.02 2.24 15 28 H 0.07 2.84 7.73 -2.39 -0.02 2.83 15 29 H 0.12 3.23 8.14 -2.39 -0.02 3.21 15 Total: -1.00 -67.66 257.94 5.60 -62.06 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.15 Total: 21.42 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 2.27 Total: -51.11 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.26 Total: -44.03 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.11 Total: -28.57 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -67.66 5.60 -62.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299408.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.090 kcal (2) G-P(sol) polarization free energy of solvation -67.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds