Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47183 * 127.30622 * 2 1 4 4 C 1.53203 * 109.13482 * 159.37338 * 3 2 1 5 5 N 1.47572 * 107.97282 * 34.64987 * 4 3 2 6 6 C 1.46494 * 127.96856 * 148.63613 * 5 4 3 7 7 C 1.50696 * 109.47175 * 85.00542 * 6 5 4 8 8 H 1.08002 * 119.99634 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00304 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99439 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46695 * 89.99871 * 11 9 7 13 13 H 1.48495 * 109.46976 * 209.99381 * 11 9 7 14 14 H 1.48492 * 109.47380 * 330.00035 * 11 9 7 15 15 S 1.66956 * 127.30847 * 180.02562 * 2 1 3 16 16 O 1.42101 * 107.11285 * 294.25608 * 15 2 1 17 17 O 1.42098 * 107.11341 * 68.97257 * 15 2 1 18 18 H 1.09005 * 109.47047 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46798 * 119.97619 * 1 2 3 20 20 H 1.08996 * 109.47046 * 239.97778 * 1 2 3 21 21 H 1.08997 * 109.54759 * 39.44000 * 3 2 1 22 22 H 1.09007 * 109.51097 * 279.28455 * 3 2 1 23 23 H 1.09002 * 109.77136 * 154.28460 * 4 3 2 24 24 H 1.08995 * 109.76903 * 275.01655 * 4 3 2 25 25 H 1.09001 * 109.46905 * 205.00251 * 6 5 4 26 26 H 1.09000 * 109.46960 * 324.99871 * 6 5 4 27 27 H 0.97001 * 119.99643 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3570 1.1707 0.0000 4 6 3.7389 0.7492 0.5099 5 7 3.9938 -0.6290 0.0478 6 6 5.2801 -1.2424 -0.2914 7 6 5.9318 -1.7684 0.9614 8 1 5.4373 -1.6565 1.9151 9 6 7.1597 -2.3916 0.8905 10 7 7.7619 -2.5273 -0.2708 11 14 7.9677 -3.0429 2.4436 12 1 7.5452 -4.4486 2.6691 13 1 9.4441 -2.9878 2.2939 14 1 7.5561 -2.2104 3.6022 15 16 2.4769 -1.3279 -0.0006 16 8 2.2866 -1.9992 1.2373 17 8 2.3428 -1.9553 -1.2685 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5135 -0.8902 20 1 -0.3633 -0.5142 0.8898 21 1 1.9471 1.9416 0.6525 22 1 2.4458 1.5608 -1.0140 23 1 4.4998 1.4190 0.1093 24 1 3.7556 0.7818 1.5992 25 1 5.1181 -2.0641 -0.9891 26 1 5.9279 -0.4967 -0.7524 27 1 8.6260 -2.9653 -0.3207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306248873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -53.144073 kcal Electronic energy + Delta-G solvation = -13707.402180 eV Core-core repulsion = 11206.959333 eV Total energy + Delta-G solvation = -2500.442847 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.067 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.40004 -36.40594 -35.09275 -34.71088 -32.60752 -29.69256 -26.56317 -25.44711 -23.10715 -21.72073 -18.54924 -16.90710 -16.75176 -16.10670 -15.51742 -15.02760 -14.67828 -14.15690 -13.73614 -13.41249 -13.01944 -12.60043 -12.30885 -11.90944 -11.54093 -11.39597 -11.30883 -11.03530 -10.87140 -10.80702 -10.34720 -10.00117 -9.79379 -8.92955 -8.48152 -8.05848 -6.09738 -4.15787 1.04972 3.27194 3.31454 3.37363 3.42068 3.76357 4.39352 4.43280 4.56742 5.08903 5.23842 5.33103 5.39221 5.64260 5.67418 5.71717 5.96087 6.04060 6.17153 6.66461 7.22753 7.40328 7.57467 7.89834 8.16827 8.91948 9.51010 10.97982 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.051480 B = 0.009009 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.769195 B = 3107.341962 C = 3147.924541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -1.018 6.018 3 C 0.075 3.925 4 C 0.074 3.926 5 N -0.981 5.981 6 C 0.288 3.712 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.900 3.100 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.764 3.236 16 O -0.981 6.981 17 O -0.990 6.990 18 H 0.075 0.925 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 8.984 0.417 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.861 5.861 3 C -0.052 4.052 4 C -0.053 4.053 5 N -0.827 5.827 6 C 0.168 3.832 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.728 3.272 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.774 3.226 16 O -0.963 6.963 17 O -0.973 6.973 18 H 0.094 0.906 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.110 0.890 22 H 0.093 0.907 23 H 0.124 0.876 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.889 7.858 0.261 13.430 hybrid contribution 0.655 0.219 0.841 1.088 sum -10.233 8.077 1.102 13.083 Atomic orbital electron populations 1.21136 0.76212 1.02982 1.01115 1.57440 1.13622 1.22661 1.92402 1.22316 0.88947 0.90982 1.02929 1.22230 0.95033 0.87314 1.00768 1.57594 1.22356 1.19495 1.83234 1.18947 0.75677 0.92851 0.95724 1.21726 1.03845 1.37929 0.94730 0.91500 1.24987 0.96916 0.95663 0.96585 1.69938 1.16360 1.43200 1.23887 0.86456 0.78139 0.79558 0.83070 1.20395 1.21119 1.19701 1.02938 0.73772 0.71584 0.74346 1.93583 1.85465 1.71457 1.45797 1.93546 1.86037 1.74059 1.43623 0.90589 0.92393 0.92344 0.88959 0.90717 0.87639 0.90606 0.94106 0.94240 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.45 11.48 59.85 0.69 2.14 15 2 N -1.02 -15.28 3.84 -121.12 -0.46 -15.74 15 3 C 0.08 0.92 7.19 -3.56 -0.03 0.89 15 4 C 0.07 1.15 7.14 -3.35 -0.02 1.12 15 5 N -0.98 -20.96 3.44 -114.74 -0.39 -21.36 15 6 C 0.29 7.43 6.27 -5.20 -0.03 7.40 15 7 C -0.54 -15.35 9.39 -34.44 -0.32 -15.67 15 8 H 0.07 1.91 7.81 -52.49 -0.41 1.49 15 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 10 N -0.90 -26.15 13.29 55.43 0.74 -25.41 15 11 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 15 S 2.76 57.56 6.18 -107.50 -0.66 56.90 15 16 O -0.98 -23.42 18.17 -57.06 -1.04 -24.45 15 17 O -0.99 -23.30 18.17 -57.06 -1.04 -24.33 15 18 H 0.08 0.60 8.13 -51.93 -0.42 0.18 15 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.11 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 250.25 15.07 3.77 3.77 Total: -1.00 -34.97 250.25 -7.27 -42.24 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -3.35 Total: -5.89 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.18 Total: -2.48 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.12 Total: -62.51 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -2.07 Total: -48.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 57.56 SS G_CDS: -0.66 Total: 56.90 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.97 -7.27 -42.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306248873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.899 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds