Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47183 * 127.30622 * 2 1 4 4 C 1.53203 * 109.13482 * 159.37338 * 3 2 1 5 5 N 1.47572 * 107.97282 * 34.64987 * 4 3 2 6 6 C 1.46494 * 127.96856 * 148.63613 * 5 4 3 7 7 C 1.50696 * 109.47175 * 85.00542 * 6 5 4 8 8 H 1.08002 * 119.99634 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00304 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99439 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46695 * 89.99871 * 11 9 7 13 13 H 1.48495 * 109.46976 * 209.99381 * 11 9 7 14 14 H 1.48492 * 109.47380 * 330.00035 * 11 9 7 15 15 S 1.66956 * 127.30847 * 180.02562 * 2 1 3 16 16 O 1.42101 * 107.11285 * 294.25608 * 15 2 1 17 17 O 1.42098 * 107.11341 * 68.97257 * 15 2 1 18 18 H 1.09005 * 109.47047 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46798 * 119.97619 * 1 2 3 20 20 H 1.08996 * 109.47046 * 239.97778 * 1 2 3 21 21 H 1.08997 * 109.54759 * 39.44000 * 3 2 1 22 22 H 1.09007 * 109.51097 * 279.28455 * 3 2 1 23 23 H 1.09002 * 109.77136 * 154.28460 * 4 3 2 24 24 H 1.08995 * 109.76903 * 275.01655 * 4 3 2 25 25 H 1.09001 * 109.46905 * 205.00251 * 6 5 4 26 26 H 1.09000 * 109.46960 * 324.99871 * 6 5 4 27 27 H 0.97001 * 119.99643 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3570 1.1707 0.0000 4 6 3.7389 0.7492 0.5099 5 7 3.9938 -0.6290 0.0478 6 6 5.2801 -1.2424 -0.2914 7 6 5.9318 -1.7684 0.9614 8 1 5.4373 -1.6565 1.9151 9 6 7.1597 -2.3916 0.8905 10 7 7.7619 -2.5273 -0.2708 11 14 7.9677 -3.0429 2.4436 12 1 7.5452 -4.4486 2.6691 13 1 9.4441 -2.9878 2.2939 14 1 7.5561 -2.2104 3.6022 15 16 2.4769 -1.3279 -0.0006 16 8 2.2866 -1.9992 1.2373 17 8 2.3428 -1.9553 -1.2685 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5135 -0.8902 20 1 -0.3633 -0.5142 0.8898 21 1 1.9471 1.9416 0.6525 22 1 2.4458 1.5608 -1.0140 23 1 4.4998 1.4190 0.1093 24 1 3.7556 0.7818 1.5992 25 1 5.1181 -2.0641 -0.9891 26 1 5.9279 -0.4967 -0.7524 27 1 8.6260 -2.9653 -0.3207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306248873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -81.663921 kcal Electronic energy + Delta-G solvation = -13708.638893 eV Core-core repulsion = 11206.959333 eV Total energy + Delta-G solvation = -2501.679560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.70248 -38.14068 -36.82895 -36.30362 -34.55700 -31.18045 -28.30781 -26.61494 -24.90116 -23.16574 -20.12775 -18.77971 -18.22284 -17.85155 -17.06391 -16.67910 -16.17440 -15.67476 -15.08793 -14.87975 -14.37718 -14.25673 -13.85387 -13.32310 -13.21424 -13.09115 -13.07769 -12.85138 -12.45560 -12.32803 -12.10820 -11.90135 -11.74165 -10.64786 -10.14012 -9.72369 -8.24802 -6.40034 -0.51852 1.39353 1.41788 1.52479 1.89502 2.22173 2.39865 3.03882 3.21952 3.33150 3.89199 4.14645 4.37548 4.66134 4.69112 4.84482 4.89844 4.93333 4.97450 5.14219 5.34169 5.60781 5.68970 5.87689 6.03776 6.72909 7.31189 8.82256 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.051480 B = 0.009009 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.769195 B = 3107.341962 C = 3147.924541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -1.005 6.005 3 C 0.078 3.922 4 C 0.061 3.939 5 N -0.996 5.996 6 C 0.300 3.700 7 C -0.563 4.563 8 H 0.058 0.942 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.964 3.036 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.264 1.264 15 S 2.765 3.235 16 O -1.023 7.023 17 O -1.029 7.029 18 H 0.121 0.879 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.141 0.859 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.008 0.992 26 H 0.037 0.963 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 10.866 1.289 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.853 5.853 3 C -0.047 4.047 4 C -0.065 4.065 5 N -0.841 5.841 6 C 0.178 3.822 7 C -0.602 4.602 8 H 0.077 0.923 9 C -0.188 4.188 10 N -0.564 5.564 11 Si 0.788 3.212 12 H -0.204 1.204 13 H -0.197 1.197 14 H -0.189 1.189 15 S 2.776 3.224 16 O -1.004 7.004 17 O -1.011 7.011 18 H 0.139 0.861 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.159 0.841 22 H 0.115 0.885 23 H 0.143 0.857 24 H 0.097 0.903 25 H 0.026 0.974 26 H 0.055 0.945 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.681 9.760 1.137 15.264 hybrid contribution 0.816 -0.288 0.548 1.024 sum -10.865 9.472 1.685 14.512 Atomic orbital electron populations 1.21573 0.73462 1.06066 1.01570 1.57143 1.14768 1.21151 1.92238 1.22566 0.86409 0.90356 1.05377 1.22674 0.97984 0.84548 1.01290 1.57314 1.20908 1.22369 1.83517 1.18466 0.77419 0.92063 0.94268 1.21992 1.04444 1.38645 0.95118 0.92349 1.25843 0.97462 0.95685 0.99804 1.70031 1.16849 1.43683 1.25821 0.85466 0.77684 0.78710 0.79313 1.20356 1.19692 1.18857 1.02572 0.74172 0.72538 0.73154 1.93527 1.86089 1.73660 1.47136 1.93492 1.86627 1.76015 1.44966 0.86052 0.92104 0.92026 0.84106 0.88502 0.85667 0.90273 0.97416 0.94520 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.20 11.48 127.77 1.47 3.67 15 2 N -1.01 -27.58 3.84 -537.11 -2.06 -29.64 15 3 C 0.08 1.60 7.19 86.32 0.62 2.22 15 4 C 0.06 1.76 7.14 86.24 0.62 2.38 15 5 N -1.00 -42.78 3.44 -516.93 -1.78 -44.56 15 6 C 0.30 15.95 6.27 85.63 0.54 16.48 15 7 C -0.56 -32.41 9.39 25.60 0.24 -32.17 15 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 15 9 C 0.01 0.68 5.46 84.66 0.46 1.14 15 10 N -0.92 -54.69 13.29 21.45 0.28 -54.40 15 11 Si 0.96 44.62 29.54 68.60 2.03 46.64 15 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 14 H -0.26 -11.79 7.11 99.48 0.71 -11.09 15 15 S 2.77 115.85 6.18 -56.49 -0.35 115.50 15 16 O -1.02 -49.73 18.17 -128.11 -2.33 -52.05 15 17 O -1.03 -49.66 18.17 -128.11 -2.33 -51.99 15 18 H 0.12 1.27 8.13 -2.38 -0.02 1.25 15 19 H 0.06 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.14 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.10 1.66 8.14 -2.38 -0.02 1.64 15 23 H 0.13 3.09 8.14 -2.39 -0.02 3.07 15 24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -77.80 250.25 -1.43 -79.24 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: 1.15 Total: -2.47 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.94 Total: -6.27 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -3.55 Total: -128.60 kcal Atomic # 8 Polarization: -99.39 SS G_CDS: -4.66 Total: -104.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 115.85 SS G_CDS: -0.35 Total: 115.50 kcal Total: -77.80 -1.43 -79.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306248873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.425 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds