Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86799 * 120.00243 * 2 1 4 4 H 1.48500 * 109.47025 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.46795 * 120.00187 * 3 2 1 6 6 H 1.48494 * 109.47362 * 239.99732 * 3 2 1 7 7 C 1.38659 * 120.00126 * 179.73091 * 2 1 3 8 8 H 1.07995 * 120.00607 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00216 * 174.93878 * 9 7 2 11 11 C 1.38793 * 119.95922 * 5.61379 * 10 9 7 12 12 C 1.38074 * 119.85540 * 179.78560 * 11 10 9 13 13 C 1.38213 * 120.01187 * 0.48766 * 12 11 10 14 14 C 1.38529 * 120.35789 * 359.73936 * 13 12 11 15 15 C 1.38126 * 119.89663 * 0.03224 * 14 13 12 16 16 C 1.51352 * 109.79170 * 179.97438 * 15 14 13 17 17 H 1.09008 * 110.30258 * 101.74267 * 16 15 14 18 18 O 1.42893 * 110.30461 * 223.89538 * 16 15 14 19 19 C 1.54347 * 105.16459 * 342.82158 * 16 15 14 20 20 C 1.51387 * 130.35340 * 180.02562 * 14 13 12 21 21 H 0.97000 * 120.00258 * 179.97438 * 1 2 3 22 22 H 1.08000 * 120.07338 * 359.97438 * 11 10 9 23 23 H 1.08001 * 119.99341 * 180.22987 * 12 11 10 24 24 H 1.08002 * 119.81852 * 179.76340 * 13 12 11 25 25 H 0.96705 * 114.00315 * 179.97438 * 18 16 15 26 26 H 1.09006 * 110.81949 * 268.10975 * 19 16 15 27 27 H 1.08997 * 111.00033 * 144.63284 * 19 16 15 28 28 H 1.08997 * 110.30181 * 316.14571 * 20 14 13 29 29 H 1.09005 * 110.30363 * 78.28993 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 1.2846 2.7464 0.0006 5 1 3.1034 1.6962 1.2126 6 1 3.1034 1.6963 -1.2124 7 6 2.0088 -1.2008 0.0056 8 1 3.0888 -1.2009 0.0061 9 8 1.3346 -2.3684 0.0116 10 6 2.0698 -3.5052 -0.0898 11 6 3.4560 -3.4377 -0.0759 12 6 4.2016 -4.5956 -0.1747 13 6 3.5677 -5.8177 -0.2973 14 6 2.1844 -5.8900 -0.3164 15 6 1.4331 -4.7356 -0.2132 16 6 -0.0406 -5.0774 -0.2594 17 1 -0.4655 -5.0561 0.7443 18 8 -0.7348 -4.1648 -1.1122 19 6 -0.1057 -6.5067 -0.8384 20 6 1.2671 -7.0881 -0.4387 21 1 -0.4850 -0.8400 -0.0004 22 1 3.9504 -2.4818 0.0151 23 1 5.2803 -4.5460 -0.1604 24 1 4.1540 -6.7211 -0.3782 25 1 -1.6842 -4.3353 -1.1809 26 1 -0.2150 -6.4809 -1.9226 27 1 -0.9153 -7.0764 -0.3824 28 1 1.6306 -7.7654 -1.2115 29 1 1.1942 -7.6077 0.5168 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306294193.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -83.389672 kcal Electronic energy + Delta-G solvation = -14754.580569 eV Core-core repulsion = 12220.922567 eV Total energy + Delta-G solvation = -2533.658002 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36850 -39.32875 -37.57087 -35.16441 -34.25423 -30.88633 -29.91327 -27.26894 -26.83616 -23.43051 -22.25857 -21.81724 -19.83027 -18.56110 -18.35450 -17.06443 -16.34207 -15.87309 -15.55971 -15.51697 -15.34706 -14.93174 -14.38357 -14.10907 -13.21476 -13.01628 -12.72909 -12.65958 -12.47941 -12.28522 -12.02576 -11.94363 -11.64424 -11.27554 -10.99803 -10.74758 -9.52426 -9.04255 -8.92504 -6.21612 0.41871 0.66586 1.46212 1.59822 1.77292 2.36198 2.76975 3.09065 3.35182 3.43732 3.60465 3.73644 4.10363 4.13460 4.21427 4.36096 4.54272 4.66210 4.73605 4.84024 4.95227 5.12486 5.21205 5.22489 5.26984 5.62066 5.64750 5.70840 6.07125 6.30993 6.88969 6.94906 7.68226 8.51925 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.009501 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.486600 B = 2946.243587 C = 3660.848264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.044 4.044 3 Si 1.146 2.854 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.495 4.495 8 H 0.087 0.913 9 O -0.234 6.234 10 C 0.134 3.866 11 C -0.259 4.259 12 C -0.066 4.066 13 C -0.184 4.184 14 C -0.053 4.053 15 C -0.205 4.205 16 C 0.147 3.853 17 H 0.054 0.946 18 O -0.580 6.580 19 C -0.136 4.136 20 C -0.069 4.069 21 H 0.261 0.739 22 H 0.117 0.883 23 H 0.151 0.849 24 H 0.154 0.846 25 H 0.385 0.615 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -13.279 -0.587 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.241 4.241 3 Si 0.961 3.039 4 H -0.196 1.196 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.104 0.896 9 O -0.141 6.141 10 C 0.084 3.916 11 C -0.279 4.279 12 C -0.084 4.084 13 C -0.203 4.203 14 C -0.053 4.053 15 C -0.206 4.206 16 C 0.089 3.911 17 H 0.071 0.929 18 O -0.387 6.387 19 C -0.173 4.173 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.135 0.865 23 H 0.168 0.832 24 H 0.172 0.828 25 H 0.234 0.766 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.839 -11.350 -0.628 11.999 hybrid contribution -0.477 -1.392 0.166 1.481 sum 3.362 -12.742 -0.462 13.187 Atomic orbital electron populations 1.70665 1.07696 1.30172 1.46265 1.28408 0.96962 1.04841 0.93874 0.82590 0.73764 0.68844 0.78666 1.19607 1.18393 1.18696 1.22638 0.93556 0.83492 1.57363 0.89572 1.83744 1.36193 1.12645 1.81483 1.19557 0.91326 0.86866 0.93861 1.21265 0.92894 1.00462 1.13230 1.21141 1.00372 0.91152 0.95707 1.20673 0.92773 0.98285 1.08534 1.20762 0.94126 0.94624 0.95780 1.19939 0.96424 0.91504 1.12782 1.21211 0.87900 0.89357 0.92619 0.92860 1.86768 1.25321 1.57446 1.69208 1.22994 0.98909 0.93365 1.02042 1.21068 0.91614 0.93976 1.03917 0.93059 0.86541 0.83164 0.82814 0.76616 0.90222 0.87158 0.87907 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.71 13.70 21.61 0.30 -59.41 15 2 C -0.04 -2.68 5.49 84.84 0.47 -2.22 15 3 Si 1.15 50.39 29.92 68.60 2.05 52.44 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 7 C -0.49 -30.76 9.48 67.92 0.64 -30.11 15 8 H 0.09 5.02 5.20 -2.91 -0.02 5.00 15 9 O -0.23 -14.85 8.81 -22.83 -0.20 -15.05 15 10 C 0.13 7.25 6.64 22.61 0.15 7.40 15 11 C -0.26 -12.28 9.16 22.36 0.20 -12.07 15 12 C -0.07 -2.39 10.04 22.22 0.22 -2.17 15 13 C -0.18 -5.94 10.04 22.33 0.22 -5.72 15 14 C -0.05 -1.84 6.14 -19.60 -0.12 -1.96 15 15 C -0.21 -9.24 5.81 -19.48 -0.11 -9.35 15 16 C 0.15 5.62 4.17 30.51 0.13 5.74 15 17 H 0.05 2.00 8.14 -2.38 -0.02 1.98 15 18 O -0.58 -24.98 13.04 -148.98 -1.94 -26.92 15 19 C -0.14 -3.42 6.80 31.51 0.21 -3.21 15 20 C -0.07 -1.64 6.77 30.52 0.21 -1.44 15 21 H 0.26 17.95 7.97 -92.71 -0.74 17.22 15 22 H 0.12 5.66 5.63 -2.91 -0.02 5.64 15 23 H 0.15 4.21 8.06 -2.91 -0.02 4.18 15 24 H 0.15 3.57 8.06 -2.91 -0.02 3.55 15 25 H 0.39 11.83 9.12 -74.05 -0.68 11.16 15 26 H 0.08 2.02 8.11 -2.38 -0.02 2.00 15 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 15 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.10 2.00 8.14 -2.38 -0.02 1.98 15 Total: -1.00 -80.89 252.04 2.96 -77.93 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.53 Total: 26.12 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 2.23 Total: -55.11 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -2.14 Total: -41.97 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -80.89 2.96 -77.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306294193.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.457 kcal (2) G-P(sol) polarization free energy of solvation -80.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds